View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_6 (Length: 529)
Name: NF10125_low_6
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 4609018 - 4608506
Alignment:
| Q |
1 |
cagcatccgcggcggccgccgtagcagctgcaacagcaattgcatgtttgttctgttgattttctgtatcagcaatataggatctgagccaagaaccatc |
100 |
Q |
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| T |
4609018 |
cagcatcagcagcggccgccgtagcagctgcaacagcaattgcatgtttgttctgttgattttctgtatcagcaatataggatctgagccaagaaccatc |
4608919 |
T |
|
| Q |
101 |
agaagatgaagtaggagtaatgttaggaggttccacttcaacattcttcccttgttttgcaaaactccatcttctcttctcctttttgatgtcaggtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4608918 |
agaagatgaagtaggagtaatgttaggaggttccacttcaacattcttcccttgttttgcaaaactccatcttctcttctcctttttgatgtcaggtgtc |
4608819 |
T |
|
| Q |
201 |
aatgaacctgaattaatgtcactgtggtccttctctttctccttcttcttgtttcctaacaaactcttaaaccatctactagcttttcccataactactt |
300 |
Q |
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| T |
4608818 |
aatgaacctgaattgatgtcactgtggtccttctctttctccttcttcttgtttcctaacaaactcttaaaccatctactagcttttcccataactactt |
4608719 |
T |
|
| Q |
301 |
cttcacaagcaagaatctgaagtgtgagtgaatgagaaaaactatgtcaaatgttgaataaacgcaatacgagggaatttggtaaaatttaaaaagagag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4608718 |
cttcacaagcaagaatctgaagtgtgagtgaatgagaaaaactatgtcaaatgttgaataaacgcaatacgagggaatttggtaaaattt-aaaagagag |
4608620 |
T |
|
| Q |
401 |
agtgtggaatgacaaaacaagtggagtttagtgcaaaaatctaaagaatctaaacattaaggaaaatattattcaataccagataagtgctcaatagaca |
500 |
Q |
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| T |
4608619 |
agtgtggaatgacaaaacaagtggagtttagtgcaaaaatctaaagaatctaaacattaaggaaaatattattcaataccaaataagtgctcaatagaca |
4608520 |
T |
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| Q |
501 |
aacggtggtaaaat |
514 |
Q |
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| T |
4608519 |
aacggtggtaaaat |
4608506 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 43315591 - 43315632
Alignment:
| Q |
253 |
ttcctaacaaactcttaaaccatctactagcttttcccataa |
294 |
Q |
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|||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
43315591 |
ttccaaacaaacccttcaaccatctactagcttttcccataa |
43315632 |
T |
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