View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_64 (Length: 226)
Name: NF10125_low_64
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_64 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 355997 - 356212
Alignment:
| Q |
1 |
gtctatgctaatcaaatagcttgaccttcgaaaaatgacgcaacagttagaatctaaaaatgctttggatggtgaggccaacgttagcacctttaataac |
100 |
Q |
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| T |
355997 |
gtctatgctaatcaaatagcttgacctccgaaaaatgacgcgacagttagaatctaaaaatgctttggatggtgaggccaatgttagcacctttaataac |
356096 |
T |
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| Q |
101 |
attggttccactactggtccagttgctcagttaactaccaaagttgtggggac--aggttctcagtatatgaatgcttctaagctgaaacagggtaatat |
198 |
Q |
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| T |
356097 |
attggttccactactggtccagttgctcagttaactaccaaagttgtggggacaaaggttcttagtatatgaatgcttctaagctgaaacagggtaatat |
356196 |
T |
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| Q |
199 |
tcaggttaatacttct |
214 |
Q |
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||| |||||||||||| |
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| T |
356197 |
tcaagttaatacttct |
356212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 10582113 - 10582240
Alignment:
| Q |
46 |
gttagaatctaaaaatgctttggatggtgaggccaacgttagcacctttaataacattggttccactactggtccagttgctcagttaactaccaaagtt |
145 |
Q |
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| T |
10582113 |
gttagaatctgaaaatgctttggatggtgatgc--------gcacctttaataacattggttccactactggtgcagttcctcagttaactaccaaagtt |
10582204 |
T |
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| Q |
146 |
gtggggacaggttctcagtatatgaatgcttctaag |
181 |
Q |
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| T |
10582205 |
gtggacaaagattctcaggatatgaatgcttctaag |
10582240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6109629 - 6109668
Alignment:
| Q |
1 |
gtctatgctaatcaaatagcttgaccttcgaaaaatgacgc |
41 |
Q |
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| T |
6109629 |
gtctatgctaatcaa-tagcttgacctccgaaaaatgacgc |
6109668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40389194 - 40389149
Alignment:
| Q |
1 |
gtctatgctaatcaaatagcttgaccttcgaaaaatgacgcaacag |
46 |
Q |
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| T |
40389194 |
gtctatgctaatcaaatagcttgatctccgaaaaatgacgcgacag |
40389149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40385601 - 40385563
Alignment:
| Q |
1 |
gtctatgctaatcaaatagcttgaccttcgaaaaatgac |
39 |
Q |
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| T |
40385601 |
gtctatgctaatcaaatagcttgatctccgaaaaatgac |
40385563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18229383 - 18229423
Alignment:
| Q |
1 |
gtctatgctaatcaaatagcttgaccttcgaaaaatgacgc |
41 |
Q |
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| T |
18229383 |
gtctatgctaatcaaataacttgacctccgaaaaatgacgc |
18229423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2227227 - 2227267
Alignment:
| Q |
1 |
gtctatgctaatcaaatagcttgaccttcgaaaaatgacgc |
41 |
Q |
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| T |
2227227 |
gtctatgctaataaaatagcttgacctccgaaaaatgacgc |
2227267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 24626 - 24586
Alignment:
| Q |
5 |
atgctaatcaaatagcttgaccttcgaaaaatgacgcaaca |
45 |
Q |
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| T |
24626 |
atgctaaccaaatagcttgatctccgaaaaatgacgcaaca |
24586 |
T |
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