View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_9 (Length: 471)
Name: NF10125_low_9
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 3923543 - 3923989
Alignment:
| Q |
9 |
aattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttcttcatcgaaaggctcttgtgtaac |
108 |
Q |
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| T |
3923543 |
aattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttcttcatcgaaaggctcttgtgtaac |
3923642 |
T |
|
| Q |
109 |
aaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttccctaaaccaacttggacaaacaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923643 |
aaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttccctaaaccaacttggacaaacaat |
3923742 |
T |
|
| Q |
209 |
tccgaactctcaggaggaaattgtagtaacaaatcgtctgcttgaatcacagtgacctttacatacctaagggaaggtgacatatataccttagaacgag |
308 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923743 |
tccgaactctcaggaggaaattgtagtaacaaatggtgtgcttgaatcacagtgacctttacatacctaagggaaggtgacatatataccttagaacgag |
3923842 |
T |
|
| Q |
309 |
tatagcaaacagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatattcatctgcttgtgttccaaaccacatagacaacatgat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923843 |
tatagcaaacagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatattcatctgcttgtgttccaaaccacatagacaacatgat |
3923942 |
T |
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| Q |
409 |
agcccctctagcaaggttcgtaccagcttgatcctctaacatatacc |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3923943 |
agcccctctagcaaggttcgtaccagcttgatcctctaacgtatacc |
3923989 |
T |
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