View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10126_high_5 (Length: 339)

Name: NF10126_high_5
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10126_high_5
NF10126_high_5
[»] scaffold0059 (2 HSPs)
scaffold0059 (11-205)||(66923-67117)
scaffold0059 (11-205)||(75028-75222)
[»] chr8 (4 HSPs)
chr8 (11-216)||(45531376-45531586)
chr8 (238-339)||(45547376-45547477)
chr8 (15-205)||(23136651-23136849)
chr8 (11-124)||(23160798-23160913)
[»] chr3 (6 HSPs)
chr3 (11-205)||(20919454-20919648)
chr3 (11-205)||(20928416-20928610)
chr3 (15-128)||(37198063-37198176)
chr3 (14-132)||(2765786-2765906)
chr3 (146-205)||(37198007-37198069)
chr3 (14-132)||(50246366-50246486)
[»] chr6 (3 HSPs)
chr6 (15-205)||(1607710-1607903)
chr6 (15-185)||(11550470-11550643)
chr6 (15-132)||(4856642-4856759)
[»] chr2 (2 HSPs)
chr2 (15-205)||(41747554-41747750)
chr2 (90-132)||(16139518-16139560)
[»] chr5 (1 HSPs)
chr5 (15-185)||(9662774-9662947)
[»] chr4 (1 HSPs)
chr4 (143-205)||(35648158-35648220)
[»] scaffold0155 (1 HSPs)
scaffold0155 (13-132)||(26886-27006)
[»] chr1 (1 HSPs)
chr1 (13-132)||(45915205-45915325)


Alignment Details
Target: scaffold0059 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 66923 - 67117
Alignment:
Q  11 gaagaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctaca 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  66923 gaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctaca 67022  T
Q  111 accaagagattaaacttctatgnnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    |||||| ||||||||||| |||        ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  67023 accaagtgattaaacttccatgtttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 67117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 75028 - 75222
Alignment:
Q  11 gaagaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctaca 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  75028 gaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctaca 75127  T
Q  111 accaagagattaaacttctatgnnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    |||||| ||||||||||| |||        ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  75128 accaagtgattaaacttccatgtttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 75222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 45531376 - 45531586
Alignment:
Q  11 gaagaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  45531376 gaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaatcaactccataatctaca 45531475  T
Q  111 accaagagattaaacttctatg-----nnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    |||||| |||||||||||||||             ||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||||||||||||    
T  45531476 accaagtgattaaacttctatgtttttttttttttacaaaaaacttccatgcttttaaaacacataaaatactttctcttatgaatttgtttatggagga 45531575  T
Q  206 taaagagatgg 216  Q
     ||||||||||    
T  45531576 gaaagagatgg 45531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 45547376 - 45547477
Alignment:
Q  238 agtacggtctggattggcttcctccttttcacttattttaatattttcagagaaaccatcttcaccgtaaggaaagatcaaaggatattgtaatggaata 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547376 agtacggtctggattggcttcctccttttcacttattttaatattttcagagaaaccatcttcaccgtaaggaaagatcaaaggatattgtaatggaata 45547475  T
Q  338 aa 339  Q
    ||    
T  45547476 aa 45547477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 23136849 - 23136651
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    ||||||||||||||||||||||||||||| |||||||| | ||| ||| |||||| |||||||||||||||||| |||||||| ||| ||||||||||||    
T  23136849 aatatagacacatgctcttcaatgggatcctgagaaagtagaattaacaattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaacca 23136750  T
Q  115 agagattaaacttcta---tgnnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatac-----tttcttttatgaatttgtttatggagga 205  Q
    || |||||||||||||   ||        ||||||||||||||||| |||||||||||| | ||||     ||| ||||||||||||||||||||||||    
T  23136749 agtgattaaacttctatgttgttttgtttacaaaaaacttccatgcttttaaaacacagaatatactttttttttttttatgaatttgtttatggagga 23136651  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 23160798 - 23160913
Alignment:
Q  11 gaagaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacaca--aaaaatgaaatcaactccataatcta 108  Q
    |||||||  ||||||||||||| |||||| | | |||||||| | ||| | | || ||| || |||||||||  |||||| |||||| | ||||||||||    
T  23160798 gaagaatggagacacatgctctccaatggaaccttgagaaagtagaattagcaataaacaattagatacacataaaaaataaaatcagccccataatcta 23160897  T
Q  109 caaccaagagattaaa 124  Q
    |||||||  |||||||    
T  23160898 caaccaattgattaaa 23160913  T

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Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 20919648 - 20919454
Alignment:
Q  11 gaagaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctaca 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  20919648 gaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctaca 20919549  T
Q  111 accaagagattaaacttctatgnnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    |||||| ||||||||||| |||        ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  20919548 accaagtgattaaacttccatgtttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 20919454  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 20928610 - 20928416
Alignment:
Q  11 gaagaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctaca 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  20928610 gaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatctaca 20928511  T
Q  111 accaagagattaaacttctatgnnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    |||||| ||||||||||| |||        ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  20928510 accaagtgattaaacttccatgtttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 20928416  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 37198176 - 37198063
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    |||||||||||||||||||||||||| || |||||||| | ||| ||| |||||| |||||||||||||||||| |||| |||  |||||| ||||||||    
T  37198176 aatatagacacatgctcttcaatgggttcctgagaaagtagaattaacaattaacaataagatacacaaaaaataaaataaacctcataatatacaacca 37198077  T
Q  115 agagattaaacttc 128  Q
    || |||||||||||    
T  37198076 agtgattaaacttc 37198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 2765786 - 2765906
Alignment:
Q  14 gaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatac--acaaaaaatgaaatcaactccataatctacaa 111  Q
    |||| |||||||||||||| |||||||| | |||||||| | ||| ||| |||||| || ||||||  | ||||||  |||||||| | ||||| |||||    
T  2765786 gaatgtagacacatgctctccaatgggaccctgagaaagtagaatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatttacaa 2765885  T
Q  112 ccaagagattaaacttctatg 132  Q
    ||||  |||||||||||||||    
T  2765886 ccaaatgattaaacttctatg 2765906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 37198069 - 37198007
Alignment:
Q  146 aaacttccatgcgtttaaaacacaggaaatac---tttcttttatgaatttgtttatggagga 205  Q
    |||||||||||| |||||||||||| ||||||   ||| ||||||||||||||||||||||||    
T  37198069 aaacttccatgcttttaaaacacagaaaatactttttttttttatgaatttgtttatggagga 37198007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 50246366 - 50246486
Alignment:
Q  14 gaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacaca--aaaaatgaaatcaactccataatctacaa 111  Q
    ||||||||| ||||||||| |||| ||||| |||||||| |  || ||| |||||| || ||||||| |  |||||  |||||||| | ||||| |||||    
T  50246366 gaatatagaaacatgctctccaataggatcctgagaaagtagcatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatttacaa 50246465  T
Q  112 ccaagagattaaacttctatg 132  Q
    | ||  |||||||||||||||    
T  50246466 ctaaatgattaaacttctatg 50246486  T

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Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 1607710 - 1607903
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    ||||||||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  1607710 aatatagacacatgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccataatctacaacca 1607809  T
Q  115 agagattaaacttctatg---nnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    || |||||||||||||||           ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  1607810 agtgattaaacttctatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaaaatacttttttttatgaatttgtttatggagga 1607903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 11550643 - 11550470
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    ||||||||||||||||| ||||||||||| |||||||| | ||| |||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||    
T  11550643 aatatagacacatgctcctcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaacca 11550544  T
Q  115 agagattaaacttctatg---nnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttctttt 185  Q
    |  |||||||||||||||           ||||||||||||||||| |||||||||||| | ||||||| ||||    
T  11550543 aatgattaaacttctatgttttttttttaacaaaaaacttccatgcttttaaaacacagaatatactttttttt 11550470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 4856642 - 4856759
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    |||||||||||||||||  |||||||||| |||||||| | ||| |||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||    
T  4856642 aatatagacacatgctccacaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaacca 4856741  T
Q  115 agagattaaacttctatg 132  Q
    |  |||||||||| ||||    
T  4856742 aatgattaaacttttatg 4856759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 41747750 - 41747554
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    ||||||||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||    
T  41747750 aatatagacacatgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaacca 41747651  T
Q  115 agagattaaacttctatg---nnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatac---tttcttttatgaatttgtttatggagga 205  Q
    || |||||||||||||||           ||||||||||||||||| |||||||||||| | ||||   ||| ||||||||||||||||||||||||    
T  41747650 agtgattaaacttctatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaatatactttttttttttatgaatttgtttatggagga 41747554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 16139560 - 16139518
Alignment:
Q  90 aaatcaactccataatctacaaccaagagattaaacttctatg 132  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  16139560 aaatcaactccataatctacaaccaagtgattaaacttatatg 16139518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 9662774 - 9662947
Alignment:
Q  15 aatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatacacaaaaaatgaaatcaactccataatctacaacca 114  Q
    ||||||||||| ||||||||||||||||| |||||||| | ||| |||||||||| |||||||||| ||||||| ||||||||  |||||||||||||||    
T  9662774 aatatagacacctgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacataaaaaataaaatcaaccacataatctacaacca 9662873  T
Q  115 agagattaaacttctatg---nnnnnnnnacaaaaaacttccatgcgtttaaaacacaggaaatactttctttt 185  Q
    || |||| ||||||||||           ||||||||| ||||||| ||||||||| || ||||||||||||||    
T  9662874 agtgatttaacttctatgtttttttgtttacaaaaaacatccatgcttttaaaacatagaaaatactttctttt 9662947  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 35648220 - 35648158
Alignment:
Q  143 aaaaaacttccatgcgtttaaaacacaggaaatactttcttttatgaatttgtttatggagga 205  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  35648220 aaaaaacttccatgcttttaaaacacagaaaattctttcttttatgaatttgtttatggagga 35648158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 27006 - 26886
Alignment:
Q  13 agaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatac--acaaaaaatgaaatcaactccataatctaca 110  Q
    ||||| |||||||||||||| |||||||| | ||||||||  | || ||| |||||| || ||||||  | ||||||  |||||||| | ||||||||||    
T  27006 agaatgtagacacatgctctccaatgggaccctgagaaag-tacatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatctaca 26908  T
Q  111 accaagagattaaacttctatg 132  Q
    |||||  ||||||| |||||||    
T  26907 accaaatgattaaatttctatg 26886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 45915325 - 45915205
Alignment:
Q  13 agaatatagacacatgctcttcaatgggatcatgagaaagaaaaatgaacgattaactataagatac--acaaaaaatgaaatcaactccataatctaca 110  Q
    ||||| |||||||||||||| |||||||| | ||||||||  | || ||| |||||| || ||||||  | ||||||  |||||||||  ||||||||||    
T  45915325 agaatgtagacacatgctctccaatgggaccctgagaaag-tacatcaacaattaacaattagatacaaataaaaaagaaaatcaactgtataatctaca 45915227  T
Q  111 accaagagattaaacttctatg 132  Q
    |||||  |||||||||| ||||    
T  45915226 accaaatgattaaacttttatg 45915205  T

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