View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10126_high_6 (Length: 306)
Name: NF10126_high_6
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 32248557 - 32248290
Alignment:
| Q |
19 |
aaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32248557 |
aaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagagg |
32248458 |
T |
|
| Q |
119 |
tttggaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagca |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
32248457 |
tttggaatttcccttcaatgaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagca |
32248358 |
T |
|
| Q |
216 |
tgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcccttctt |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32248357 |
tggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcattttccaatttcccttctt |
32248290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 32236363 - 32236098
Alignment:
| Q |
19 |
aaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32236363 |
aaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagagg |
32236264 |
T |
|
| Q |
119 |
tttggaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagca |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
32236263 |
tttggaatttcccttcaatgaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagca |
32236164 |
T |
|
| Q |
216 |
tgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcccttc |
281 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
32236163 |
tggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcagtttccactttcccttc |
32236098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 262
Target Start/End: Complemental strand, 32254733 - 32254509
Alignment:
| Q |
38 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggag---atggaatgttgtccttattgagaagaggtttggaacttcccttc |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||| |||||| ||| ||| |
|
|
| T |
32254733 |
gttgtccttatagagaagagggtggaaatttccatcccatgtaggaggaggaggggatggaatgttgtccttatagagaagagggttggaatctccattc |
32254634 |
T |
|
| Q |
135 |
aatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatcttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
234 |
Q |
| |
|
||||||||||||| ||||||||| | ||| |||||||||||| || || |||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
32254633 |
aatgaggtaatgtcaaagttgctt---tttcttttagttttttttgatgtagcactatgatgaaggaaatgcttttgatcatggctaccaacttgacttg |
32254537 |
T |
|
| Q |
235 |
cagttcttgtacgaacatgttgtgaaat |
262 |
Q |
| |
|
|||| |||||| || ||||| |||||| |
|
|
| T |
32254536 |
gagtttttgtactaagatgttctgaaat |
32254509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 32254812 - 32254771
Alignment:
| Q |
19 |
aaggaagagctggaacatagttgtccttatagagaagagggt |
60 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
32254812 |
aaggaagagctggaacatagctgtccttatagagaagggggt |
32254771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 23193978 - 23193907
Alignment:
| Q |
19 |
aaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggag |
90 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
23193978 |
aaggaagagctggagcatagttttccttatagagaagaggttggaaatttccatcccataaggtatgaggag |
23193907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 37027805 - 37027885
Alignment:
| Q |
200 |
gaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttccctt |
280 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||||| |||| |||||||| |
|
|
| T |
37027805 |
gaaatgcttttgagcatggctagcaacttgagttgtagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
37027885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 37027682 - 37027724
Alignment:
| Q |
38 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
80 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
37027682 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
37027724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 23193803 - 23193760
Alignment:
| Q |
191 |
ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
234 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23193803 |
ttggtgaaggaaagtcttttgagcatggctagcaacttgacttg |
23193760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University