View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10126_high_8 (Length: 272)
Name: NF10126_high_8
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 4133175 - 4132933
Alignment:
| Q |
20 |
aagggttcatagtttattttgattaaatatgtttcataaactatagaagctaatctacactaagctnnnnnnnnnnnnnnnnntaattcaggttatggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4133175 |
aagggttcatagtttattttgattaaatatgtttcataaactatagaagctaatctacactaagctaaaaaaagatgaaaaaataattcaggttatggtt |
4133076 |
T |
|
| Q |
120 |
ggtcaaattttctatcagagccatcaaagttttgctgatagagatatttagattttctagtttaatgtctgattttgttgttgttgtgcttttatttttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4133075 |
ggtcaaattttctatcagagccatcaaagttttgctgatagagatatttagattttctagtttaatgtctgattttgttgttgtcgtgcttttatttttc |
4132976 |
T |
|
| Q |
220 |
ttgcagaatctggattcttgcagctcatgcacacaattctctg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4132975 |
ttgcagaatctggattcttgcagctcatgcacacaattctctg |
4132933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 4110640 - 4110591
Alignment:
| Q |
213 |
atttttcttgcagaatctggattcttgcagctcatgcacacaattctctg |
262 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4110640 |
attttccttacagaatctggattcttgcagctcatgctgacaattctctg |
4110591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 4109792 - 4109756
Alignment:
| Q |
223 |
cagaatctggattcttgcagctcatgcacacaattct |
259 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4109792 |
cagaatctggattcttgcagctcatgcccacaattct |
4109756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University