View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_1 (Length: 602)
Name: NF10126_low_1
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 40 - 322
Target Start/End: Original strand, 36762383 - 36762665
Alignment:
| Q |
40 |
atcgatatatgttagtagtaannnnnnngaggaaatttttctttgatgcaatttctttatgttctaacgcaatctattgcactactcccttagagacttt |
139 |
Q |
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| T |
36762383 |
atcgatatatgttagtagttatttttttgaggagatttttctttgatgtaatttctttatgttctaacggaatctattgcactactcccttagagacttt |
36762482 |
T |
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| Q |
140 |
tcttaatttaagcatttccttttacttcacattgtgcaatcctaatggttaaaaattctgagagccacattcatttgaggtctaggataataagataagg |
239 |
Q |
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| T |
36762483 |
tcttaatttaagcatttccttttacttcacattgtgcaatcctaatggttaaaaattctgagagccacattcatttgaggtctaggataataagataagg |
36762582 |
T |
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| Q |
240 |
gttcagaaaactggattccacacaaaattcatttttggctaaaaatatataaaatggnnnnnnnncattagacatatatgtca |
322 |
Q |
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| T |
36762583 |
gttcagaaaactggattccacacaaaattcatttttggctaaaaatatataaaatggaaaaaaaacattagacatatatgtca |
36762665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 387 - 576
Target Start/End: Original strand, 36762730 - 36762919
Alignment:
| Q |
387 |
cttttgcaccctctcatttcttgtcctgttttttcacaccccataatataatatactataaccattcaacttcagcacacacttcttcttcctcagtctc |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36762730 |
cttttgcaccctctcatttcttgtcctgttttttcacaccccataatataatatactataaccattcaacttcagcacacactgcttcttcctcagtctc |
36762829 |
T |
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| Q |
487 |
tcaagtaatccatagaaatggaagcacatgcaggagccaaccaaaggattgcaagaatctctgctcatcttcacccttcaaatttccagg |
576 |
Q |
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| T |
36762830 |
tcaagtaatccatagaaatggaagcacatgcaggagccaaccaaaggattgcaagaatctctgctcatcttcacccttcaaatttccagg |
36762919 |
T |
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