View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_11 (Length: 313)
Name: NF10126_low_11
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 18107101 - 18107277
Alignment:
| Q |
27 |
ttagatttttaccgccatttcattaatgtttaatctttcatcataaaaagggtaaaaacacagcaagattaattctaacgaaaggggttaggctctgaca |
126 |
Q |
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| T |
18107101 |
ttagttttttaccgccatttcattaatgtttaatctttcaacataaaaagggtaaaaacaccacaagattaattttagcgtaaggggttaggctctgaca |
18107200 |
T |
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| Q |
127 |
acgtagtcagtcattgttcaaattccgatgatatgttggggaaccataatgacctgtaata-ggtgtgctgccatac |
202 |
Q |
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| T |
18107201 |
acgtagtcggtcattgttcaaattccgatgatatgttgggaaaacataatgacctcaaatagggtgtgctgccatac |
18107277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 18107497 - 18107555
Alignment:
| Q |
241 |
agtaagtgtacgaaaaatcacgcaagtaataaaagtttataactataaggattgtaatt |
299 |
Q |
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| T |
18107497 |
agtaagtgtacgaaaaatcacgcaagtaataaaagtttataactatatggattgtaatt |
18107555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 18115621 - 18115661
Alignment:
| Q |
241 |
agtaagtgtacgaaaaatcacgcaagtaataaaagtttata |
281 |
Q |
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| T |
18115621 |
agtaagtgtaccaaaaatcacacaagtaataaaagtttata |
18115661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 225
Target Start/End: Original strand, 18107461 - 18107492
Alignment:
| Q |
194 |
ctgccatactatggttgaaaattttgatacaa |
225 |
Q |
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| T |
18107461 |
ctgccatactatggttgaaaattttgatacaa |
18107492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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