View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_13 (Length: 290)
Name: NF10126_low_13
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 28621336 - 28621595
Alignment:
| Q |
10 |
gcaaaggtgaaccatcaaaatcatcaatttagcattaatataccacccatgctcatgatcctcccagaacaattctatggtgctgatacgtatacagaaa |
109 |
Q |
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| T |
28621336 |
gcaaagttgaaccatcaaaatcatcaatttagcattaatataccacccatgctcatgatcctcccagaacaattctatggtgctgatacgtatacagaaa |
28621435 |
T |
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| Q |
110 |
acaagagatacttgtatagcattctaagtcacagagagtaccccgttacannnnnnnccagtatgaaaattaaaaggtgtctgggcttcttcatttggtt |
209 |
Q |
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| T |
28621436 |
acaagagatacttgcatagcattctaagtcacagagagtaccccattacatttttttccagtatgaaaattaaaaggtgtctggac-tcttcatttggtt |
28621534 |
T |
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| Q |
210 |
ggatttcattagtggacaataatgatgccataactctagtgaattcttttaagtctggtac |
270 |
Q |
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| T |
28621535 |
ggatttcattagtggacaataatgatgccataactctagtgaatccttttaagtctggtac |
28621595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 28612861 - 28612714
Alignment:
| Q |
112 |
aagagatacttgtatagcattctaagtcacagagagtaccccgttacannnnnnnccagtatgaaaattaaaaggtgtctgggcttcttcatttggttgg |
211 |
Q |
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| T |
28612861 |
aagagatccttatatagcattctaagtcacaaagagtaccccattccatttttatcca---tcaaaattacaatgtgtcggggct-cttcatttggttgg |
28612766 |
T |
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| Q |
212 |
atttcattagtggacaataatgatgccataactctagtgaattcttttaagt |
263 |
Q |
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| T |
28612765 |
atttcattagtggacgataatgatgtcataactctatttaatccttttaagt |
28612714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 28612964 - 28612897
Alignment:
| Q |
10 |
gcaaaggtgaaccatcaaaatcatcaatttagcattaatataccacccatgctcatgatcctcccaga |
77 |
Q |
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| T |
28612964 |
gcaaagcttaaccatcaaagccatcaatttaggagtaatataccacccatgctcatgatcctctcaga |
28612897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 29279290 - 29279353
Alignment:
| Q |
19 |
aaccatcaaaatcatcaatttagcattaatataccacccatgctcatgatcctcccagaacaat |
82 |
Q |
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| T |
29279290 |
aaccataaaaatcatcaatttaggattaatgtaccacctatgttgatgatcctctcagaccaat |
29279353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29287723 - 29287776
Alignment:
| Q |
19 |
aaccatcaaaatcatcaatttagcattaatataccacccatgctcatgatcctc |
72 |
Q |
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| T |
29287723 |
aaccataaaaatcatcaatttaggattaatgtactacctatgcttatgatcctc |
29287776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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