View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_14 (Length: 281)
Name: NF10126_low_14
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_14 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 18914373 - 18914635
Alignment:
| Q |
1 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18914373 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgca |
18914472 |
T |
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| Q |
101 |
ataaattcatcaagaaggattaacagcgacgttggaacgcagttgtttgaatgcggagactttgctataggggaattcatgagtagttagtgatgttttt |
200 |
Q |
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| T |
18914473 |
ataagttcatcaagaaggattaacagcgacgttggaacgcagttgtttgaatgcggagactttgctataggggaattcatgagtagttagtgatgttttt |
18914572 |
T |
|
| Q |
201 |
gttgtaaattgtaattaaagtataaaatgttgaaccctactacacgtttggggatttctgagt |
263 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18914573 |
gttgtaaattgtaattgaagtataaaatgttgaaccctactacacgtttggggatttctgagt |
18914635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 18909625 - 18909790
Alignment:
| Q |
1 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcg |
100 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18909625 |
tttggcgaagaaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgtgaaaggatttctgcg |
18909724 |
T |
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| Q |
101 |
ataaattcatcaagaaggattaacagcgacgttg---gaacgcagttgtttgaatgcggagacttt |
163 |
Q |
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| T |
18909725 |
atgagttcgtcaagaaggattaacagcgatgttgaaacaacgccgctgtttgaatgcggagacttt |
18909790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 18921521 - 18921706
Alignment:
| Q |
1 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||| |
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| T |
18921521 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagtttttactggaagacgtgaaaggatttctgcg |
18921620 |
T |
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| Q |
101 |
ataaattcatcaagaaggattaacagcgacgttgg---aacgcagttgtttgaatgcggagactttgctataggggaattcatgag |
183 |
Q |
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| T |
18921621 |
atgagctcatcaagaaggattaacagcgacgctggaacaacgccgctgtttctatgtggagactttgctggaggggaattcatgag |
18921706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 7264 - 7116
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaattcatcaaga |
115 |
Q |
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|||||| |||||||||||| |||||||||| || ||||| | ||||||||||||||||||||||||||| ||||| |||||| |||||| ||| |||||| |
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| T |
7264 |
atgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttgacaggaagtcgtgaaagaatttctacgataagttcgtcaaga |
7165 |
T |
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| Q |
116 |
aggattaacagcgacgttggaacgcagttgtttgaatgcggagactttg |
164 |
Q |
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|||| || ||||||||||| | ||||| |||||| |||||||||||| |
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| T |
7164 |
aggactatcagcgacgttgtagcgcagcagtttgatggcggagactttg |
7116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 12735666 - 12735814
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaattcatcaaga |
115 |
Q |
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|||||| |||||||||||| ||||||||||||| ||||| | |||||||| |||||||||||||||||| ||||| |||||| |||||| |||||||||| |
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| T |
12735666 |
atgagagattagggttttccatgatttgcaaacacatttgaattgcatcaaagttttgacaggaagtcgtgaaagaatttctacgataagttcatcaaga |
12735765 |
T |
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| Q |
116 |
aggattaacagcgacgttggaacgcagttgtttgaatgcggagactttg |
164 |
Q |
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|||| || |||||| |||| | ||||| || |||| |||||||||||| |
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| T |
12735766 |
aggactatcagcgaggttgtagcgcagcagtatgaaggcggagactttg |
12735814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 32579711 - 32579811
Alignment:
| Q |
19 |
agaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaattcatcaagaagg |
118 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||| | |||||| ||||||||||||||||| || || |||||||| |||| | ||||||||| ||| |
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| T |
32579711 |
agaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacaggaaggcgtgataggatttccacgatgagttcatcaaggagg |
32579810 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
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| |
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| T |
32579811 |
a |
32579811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 19879687 - 19879793
Alignment:
| Q |
8 |
aaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaatt |
107 |
Q |
| |
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|||| ||||| |||||||||||||||| | ||||||||||| ||||| | |||||| |||||||||||||||||||| |||||||| |||| ||| | || |
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| T |
19879687 |
aaggcaggattagaaattagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgaaaggatgtctgtgatgagtt |
19879786 |
T |
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| Q |
108 |
catcaag |
114 |
Q |
| |
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||||||| |
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| T |
19879787 |
catcaag |
19879793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19721293 - 19721196
Alignment:
| Q |
1 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctg |
98 |
Q |
| |
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|||| |||||| |||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| || || |||||||||| |
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| T |
19721293 |
tttggcgaaggcgggatcagagattagggttttcaatgatttgcagacacatttcatttgcatcagagttttgaaaggaaggcgtgataggatttctg |
19721196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 19778826 - 19778721
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaattcatcaaga |
115 |
Q |
| |
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||||||||||||||||||| | ||||||||||| ||||| | |||||| |||||||||||||||||||| || ||||| |||| ||| | ||||||||| |
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| T |
19778826 |
atgagaaattagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgacaggatgtctgtgatgagttcatcaagg |
19778727 |
T |
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| Q |
116 |
aggatt |
121 |
Q |
| |
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|||||| |
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| T |
19778726 |
aggatt |
19778721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 19888557 - 19888660
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaattcatcaaga |
115 |
Q |
| |
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||||||||||||||||||| ||||||||||||| ||||| | |||||| |||||||||||||||||||| || ||||| || |||| | ||||||||| |
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| T |
19888557 |
atgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgacaggatatccacgatgagttcatcaagg |
19888656 |
T |
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| Q |
116 |
agga |
119 |
Q |
| |
|
|||| |
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|
| T |
19888657 |
agga |
19888660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 19357152 - 19357087
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaag |
81 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
19357152 |
atgagaaataagggttttccatgatttgcaaacgcatttgaattgcatcagagttttgacgggaag |
19357087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 19351846 - 19351911
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaag |
81 |
Q |
| |
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||||||||| |||||| || ||||||| ||||| ||||| | |||||| ||||||||||||||||| |
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|
| T |
19351846 |
atgagaaatcagggttgtccatgatttacaaacacatttgaattgcataagagttttgacaggaag |
19351911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 14748621 - 14748518
Alignment:
| Q |
16 |
atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttctgcgataaattcatcaaga |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| | |||||| |||||||||||||| ||||| || | || ||| |||||| ||||||||| |
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| T |
14748621 |
atgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacagggagtcgtgacaagaattccacgataagttcatcaagg |
14748522 |
T |
|
| Q |
116 |
agga |
119 |
Q |
| |
|
|||| |
|
|
| T |
14748521 |
agga |
14748518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2910275 - 2910180
Alignment:
| Q |
1 |
tttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaagtcgagaaaggatttc |
96 |
Q |
| |
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||||| ||| |||||||| ||||||||||||||| |||| || || ||| ||||||| || || |||| |||||| ||||| || || |||||||| |
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| T |
2910275 |
tttgatgaatgaaggatgcgaaattagggttttccatgacttacatacggatttcatctgaattagagatttgactggaaggcgggataggatttc |
2910180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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