View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10126_low_17 (Length: 268)

Name: NF10126_low_17

Description: NF10126

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10126_low_17

[»] chr6 (1 HSPs)

Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 201; E-Value: 1e-110

Query Start/End: Original strand, 15 - 261

Target Start/End: Complemental strand, 7360675 - 7360430

Alignment:

Q	15	caatttcatggatttccagtgttatgctaatatttgctattttcataagcaagaggctttaagtttgagatactaaaaacaatacacatcttttattgta	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7360675	caatttcatggatttccagtgttatgctaatatttgctattttcataagcaagaggctttaagtttgagatactaaaaacaatacacatcttttattgta	7360576	T

Q	115	actcatatgccactctatttttcttactcgtttgcagtgcatgcataaattaaaattcnnnnnnngtcttggtgaaaaggataagtcgtgaaaataaggc	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	7360575	actcatatgccactctatttttcttactcgtttgcaatgcatgcataaattaaaattc-ttttttgtcttggggaaaaggataagtcgttaaaataaggc	7360477	T

Q	215	gcattttttgttgcatatctctatatgtagagcaagtcggtcctttg	261	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	7360476	gtattttttgttgcatatctctatatgtagagcaagtcggtcttttg	7360430	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]