View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10126_low_18 (Length: 250)

Name: NF10126_low_18
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10126_low_18
NF10126_low_18
[»] chr1 (4 HSPs)
chr1 (1-160)||(14094616-14094765)
chr1 (151-237)||(14094459-14094545)
chr1 (83-163)||(14087695-14087775)
chr1 (31-102)||(14079526-14079597)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 14094765 - 14094616
Alignment:
Q  1 tgagcataatgattcttgttgggctacaactctcctagatttgactttaatctaataaatactgattgtattgtatcctataagtgtttggtttgtgcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14094765 tgagcataatgattcttgttgggctacaactctcctagatttgactttaatctaataaatactgattgtattgtatcctataagtgtttggtttgtgcat 14094666  T
Q  101 atctaaaatatcataatgcccttggactacaatgtcagaagtaatattacattctcttaa 160  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  14094665 atc----------taatgcccttggactacaatgtcagaagtaatattacattctcttaa 14094616  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 14094545 - 14094459
Alignment:
Q  151 attctcttaaatcagaatggtctcttgtttaatacatctaatgaaccatcattgtactgtttttgatgtcaaagcaggtgtgtgttc 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14094545 attctcttaaatcagaatggtctcttgtttaatacatctaatgaaccatcattgtactgtttttgatgtcaaagcaggggtgtgttc 14094459  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 14087775 - 14087695
Alignment:
Q  83 agtgtttggtttgtgcatatctaaaatatcataatgcccttggactacaatgtcagaagtaatattacattctcttaaatc 163  Q
    |||||||||||||||||||||  ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  14087775 agtgtttggtttgtgcatatcataaataacataatgcccttagactataatgtcagaagtaatattacattctcttaaatc 14087695  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 14079597 - 14079526
Alignment:
Q  31 tctcctagatttgactttaatctaataaatactgattgtattgtatcctataagtgtttggtttgtgcatat 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  14079597 tctcctatatttgactttaatctaataaatactgattgtattgtatcctatgagtgtttgttttgtgcatat 14079526  T

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