View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_19 (Length: 243)
Name: NF10126_low_19
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14094889 - 14095113
Alignment:
| Q |
1 |
attggacttctgttcccagcaagattggtcttccagtgaagtctttgaattatgtgatattttcatgctcctacaacatattttttcataccaagcataa |
100 |
Q |
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| T |
14094889 |
attggacttctgttcccagcaagattggtcttccagtgaagtctttgaattatgtgatattttcatgctcctacaacatattttttcataccaagcataa |
14094988 |
T |
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| Q |
101 |
acaatgaattagagaaagggctatgctagctttcgttgtgattgagaacaccaaagtaaagtccaaaactcgattctaaaatatatatgttccagaacca |
200 |
Q |
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| T |
14094989 |
acaatgaattagagaaagggctctgctagctttcgttgtgattgagaacaccgaagttaagtccaaaactcgattctaaaatatatatgttccagaacct |
14095088 |
T |
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| Q |
201 |
aactacaaacgactaatgcactgat |
225 |
Q |
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| T |
14095089 |
aactacaaacgactaatgcagtgat |
14095113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 14079807 - 14079948
Alignment:
| Q |
75 |
aacatattttttcataccaagcataaacaatgaattagagaaagggctatgctagctttcgttgtgattgagaacaccaaagtaaagtccaaaactcgat |
174 |
Q |
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| T |
14079807 |
aacatattttttcaaaccaagcataaacaatgaa--agataaaggtctctgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaactcgat |
14079904 |
T |
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| Q |
175 |
tctaaaatatatatgttccagaaccaaactacaaacgactaatg |
218 |
Q |
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| T |
14079905 |
cctaaataaaatatgttctgaaacctaactacaaaggactaatg |
14079948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 14086451 - 14086558
Alignment:
| Q |
72 |
tacaacatattttttcataccaagcataaacaatgaattagagaaagggct-atgctagctttcgttgtgattgagaacaccaaagtaaagtccaaaact |
170 |
Q |
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| T |
14086451 |
tacaacatattttttcaaaccaagcataaacaatgaa--agagaaaggtctcatgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaact |
14086548 |
T |
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| Q |
171 |
cgattctaaa |
180 |
Q |
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|||| ||||| |
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| T |
14086549 |
cgatcctaaa |
14086558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 14129597 - 14129662
Alignment:
| Q |
26 |
tggtcttccagtgaagtctttgaattatgtgatattttcatgctcctacaacatattttttcatac |
91 |
Q |
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| T |
14129597 |
tggtcttccagtgaagcctttgaattctgtgatctttgcatgctcctgcaccacattttgtcatac |
14129662 |
T |
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