View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10126_low_2 (Length: 540)

Name: NF10126_low_2
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10126_low_2
NF10126_low_2
[»] chr5 (13 HSPs)
chr5 (1-540)||(41958200-41958745)
chr5 (1-540)||(43300144-43300685)
chr5 (62-498)||(23737896-23738334)
chr5 (62-498)||(19208779-19209217)
chr5 (144-315)||(28450488-28450660)
chr5 (383-498)||(3174178-3174298)
chr5 (429-498)||(10572717-10572786)
chr5 (144-204)||(28450712-28450772)
chr5 (429-512)||(32863643-32863727)
chr5 (1-60)||(19208201-19208261)
chr5 (83-121)||(28451131-28451169)
chr5 (1-60)||(23738854-23738914)
chr5 (1-44)||(28451759-28451802)
[»] chr7 (6 HSPs)
chr7 (1-537)||(44660284-44660820)
chr7 (429-498)||(6472280-6472349)
chr7 (429-498)||(9371821-9371890)
chr7 (429-498)||(21358058-21358127)
chr7 (429-498)||(35013010-35013079)
chr7 (427-492)||(31419280-31419345)
[»] chr8 (13 HSPs)
chr8 (62-512)||(43916100-43916552)
chr8 (383-512)||(38521211-38521346)
chr8 (383-512)||(1668104-1668239)
chr8 (383-512)||(16658819-16658954)
chr8 (429-498)||(22432327-22432396)
chr8 (429-498)||(27576777-27576846)
chr8 (429-498)||(29182611-29182680)
chr8 (383-485)||(22014862-22014969)
chr8 (429-492)||(774716-774780)
chr8 (429-485)||(11472395-11472451)
chr8 (1-59)||(43916758-43916816)
chr8 (429-498)||(6786451-6786521)
chr8 (427-492)||(42808687-42808752)
[»] chr1 (10 HSPs)
chr1 (351-538)||(17480946-17481133)
chr1 (398-498)||(48184253-48184352)
chr1 (429-498)||(29599287-29599356)
chr1 (429-498)||(324693-324762)
chr1 (429-475)||(26014504-26014550)
chr1 (437-485)||(6165083-6165131)
chr1 (437-485)||(10801602-10801650)
chr1 (437-485)||(16764571-16764619)
chr1 (429-492)||(26355025-26355089)
chr1 (375-427)||(20727511-20727562)
[»] scaffold1160 (1 HSPs)
scaffold1160 (393-512)||(2466-2585)
[»] chr4 (11 HSPs)
chr4 (383-512)||(13740237-13740372)
chr4 (383-512)||(23218205-23218340)
chr4 (383-512)||(21355866-21356001)
chr4 (393-498)||(45143986-45144096)
chr4 (393-498)||(45152755-45152865)
chr4 (429-498)||(21604440-21604509)
chr4 (429-498)||(46164402-46164471)
chr4 (429-498)||(47825922-47825991)
chr4 (429-498)||(54785224-54785293)
chr4 (429-498)||(8433016-8433085)
chr4 (429-485)||(38115468-38115524)
[»] scaffold0393 (1 HSPs)
scaffold0393 (383-512)||(11154-11289)
[»] chr2 (3 HSPs)
chr2 (383-512)||(3935357-3935492)
chr2 (429-498)||(25697603-25697672)
chr2 (429-498)||(38978409-38978478)
[»] chr3 (5 HSPs)
chr3 (429-512)||(2338850-2338934)
chr3 (393-498)||(52893445-52893555)
chr3 (393-496)||(21239451-21239559)
chr3 (429-498)||(9456428-9456497)
chr3 (427-492)||(40922976-40923041)
[»] scaffold1084 (1 HSPs)
scaffold1084 (429-499)||(1216-1286)
[»] chr6 (2 HSPs)
chr6 (429-492)||(32397252-32397316)
chr6 (429-510)||(9303006-9303087)
[»] scaffold1300 (2 HSPs)
scaffold1300 (435-485)||(968-1018)
scaffold1300 (369-416)||(755-802)
[»] scaffold0285 (1 HSPs)
scaffold0285 (437-485)||(8417-8465)
[»] scaffold0054 (1 HSPs)
scaffold0054 (437-485)||(2890-2938)


Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 41958200 - 41958745
Alignment:
Q  1 gcttttgatatcgccgtgttt-gtaagtaactgcgattcatgctgcatcaacaacatttgataaacagcaggctttgattcaatgcaaaggaaaaagagg 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958200 gcttttgatatcgccgtgttttgtaagtaactgcgattcatgctgcatcaacaacatttgataaacagcaggctttgattcaatgcaaaggaaaaagagg 41958299  T
Q  100 gttttcatcaaactgctttgaataaataacatttgttattgtatttgttcctaaaccaagaacattgaaaaacacagcataatactaaaacaaaaacata 199  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  41958300 cttttcatcaaactgctttgaataaacaacatttgttattgtatttgttcctaaaccaaaaacatcgaaaaacacagcatagtactaaaacaaaaacata 41958399  T
Q  200 acatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacctccattttagcataaagacccaaacatacataaa-tttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||    
T  41958400 acatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaaccaccattttagcataaagacacaaacttacataaattttt 41958499  T
Q  299 tgatgacccatttcacagaacatttcatacagcaatcaagacatgtattcactaatcaactaggtttaacaacaacagatggaaaactcattgaaatcaa 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41958500 tgatgacccatttcacagaacatttcatacagcaatcaagacatgtattcactaatcaactaggtttaacaacaacatatggaaagctcattgaaatcaa 41958599  T
Q  399 ctaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagag 493  Q
    ||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  41958600 ctaaa-aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggtttatggagag 41958698  T
Q  494 agatgagataactctctaatcaacacagaaaacggaggaggatgcga 540  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  41958699 agatgagataactctctaatcaacagagaaaacggaggaggatgcga 41958745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 43300685 - 43300144
Alignment:
Q  1 gcttttgatatcgccgtgtttgtaagtaactgcgattcatgctgcatcaacaacatttgataaacagcaggctttgattcaatgcaaaggaaaaagaggg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43300685 gcttttgatatcgccgcgtttgtaagtaactgcgattcatgctgcatcaacaacatttgataaacagcaggctttgattcaatgcaaaggaaaaagaggc 43300586  T
Q  101 ttttcatcaaactgctttgaataaataacatttgttattgtatttgttcctaaaccaagaacattgaaaaacacagcataatactaaaacaaaaacataa 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43300585 ttttcatcacactgctttgaataaacaacatttgttattgt------tcctaaaccaagaacattgaaaaacacagcatagtactaaaacaaaaacataa 43300492  T
Q  201 catagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacctccattttagcataaagacccaaacatacataaat-tttt 299  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| | ||||||| ||||    
T  43300491 catagttaaatcaaaagcaaaactcatgaaacaaactatacactaaatcactttccaaccaccattttagcgtaaagacacaaactttcataaatttttt 43300392  T
Q  300 gatgacccatttcacagaacatttcatacagcaatcaagacatgtattcactaatcaactaggtttaacaacaacagatggaaaactcattgaaatcaac 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43300391 gatgacccatttcacagaacatttcatacagcaaacaagacatgtattcactaatcaactaggtttaacaacaacagatggaaaactcattgaaatcaac 43300292  T
Q  400 taaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagaga 494  Q
     ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43300291 aaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaattagggtttatggagaga 43300192  T
Q  495 gatgagataactctctaatca--acacagaaaacggaggaggatgcga 540  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||    
T  43300191 gatgagataactctgtaatcaacacacagaaaacggaggaggatgcga 43300144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 62 - 498
Target Start/End: Complemental strand, 23738334 - 23737896
Alignment:
Q  62 aaacagcaggctttgattcaatgcaaaggaaaaagagggttttcatcaaactgctttgaataaataacatttgttattgtatttgttcctaaaccaagaa 161  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||      ||||||||||||||    
T  23738334 aaacagcagtctttgattcactgcaaaggaaaaagaggcttttcatcaaactgctttgaataaacaacatttgttattgt------tcctaaaccaagaa 23738241  T
Q  162 cattgaaaaacacagcataatactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacct 261  Q
    |||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||     
T  23738240 cattgaaaaacacaacatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcacgaaataaactacacactaaatcactttccaacca 23738141  T
Q  262 ccattttagcataaagacccaaacatacataaa-tttttgatgacccatttcacagaacatttcatacagcaatcaagac--atgtattcactaatcaac 358  Q
    |||||||||||||||||| || || | |||||| |||||||| ||| |||||||||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  23738140 ccattttagcataaagacacagactttcataaactttttgataacctatttcacagaacatttcatacagcaaacaagacatatgtaatcactaatcaac 23738041  T
Q  359 taggtttaacaacaacagatggaaaactcattgaaatcaactaaagaacatgtaatcattaaagaa-----aaatttgaacgaaattacattcaatttca 453  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||     | ||||||| |||||||||||||||||||    
T  23738040 taggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaatttca 23737941  T
Q  454 cattaccttataatttacaacaattagagtttatggagagagatg 498  Q
      |||||||| |||||||||||||||| |||||||||||||||||    
T  23737940 tgttaccttacaatttacaacaattagggtttatggagagagatg 23737896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 62 - 498
Target Start/End: Original strand, 19208779 - 19209217
Alignment:
Q  62 aaacagcaggctttgattcaatgcaaaggaaaaagagggttttcatcaaactgctttgaataaataacatttgttattgtatttgttcctaaaccaagaa 161  Q
    ||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||      ||||||||||||||    
T  19208779 aaacaacagtctttgattcactgcaaaggaaaaagaggcttttcatcaaactgctttgaataaacaacacttgttattgt------tcctaaaccaagaa 19208872  T
Q  162 cattgaaaaacacagcataatactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacct 261  Q
    |||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||     
T  19208873 cattgaaaaacacaacatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcacgaaataaactacacactaaatcactttccaacca 19208972  T
Q  262 ccattttagcataaagacccaaacatacataaa-tttttgatgacccatttcacagaacatttcatacagcaatcaagac--atgtattcactaatcaac 358  Q
    |||||||||||||||||| ||||| | |||||| ||||||||  || |||||||||||||||||||||||||| | ||||  ||||| | ||||||||||    
T  19208973 ccattttagcataaagacacaaactttcataaattttttgatagcctatttcacagaacatttcatacagcaaactagacatatgtactaactaatcaac 19209072  T
Q  359 taggtttaacaacaacagatggaaaactcattgaaatcaactaaagaacatgtaatcattaaagaa-----aaatttgaacgaaattacattcaatttca 453  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |     | ||||||| |||||||||||||||||||    
T  19209073 taggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaatttca 19209172  T
Q  454 cattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    | ||||||||  ||||||||||||||| |||||||||||||||||    
T  19209173 cgttaccttacgatttacaacaattagggtttatggagagagatg 19209217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 28450660 - 28450488
Alignment:
Q  144 ttgttcctaaaccaagaacattgaaaaacacagcataatactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaactatacac 243  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  28450660 ttgttcctaaaccaagaacattgaaaaacacaacatagtactaaaacaaaaacataacatagttaaattaaatgcaaaactcatgaaacaaactattaac 28450561  T
Q  244 taaatcactttccaacctccattttagcataaagacccaaacatacataaatt-tttgatgacccatttcaca 315  Q
    ||||||||||||||||| |||||||||| ||||||   |||| | |||||||| |||||||||||||||||||    
T  28450560 taaatcactttccaaccaccattttagcctaaagatataaactttcataaattctttgatgacccatttcaca 28450488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 3174298 - 3174178
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| ||||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  3174298 aactcatggaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 3174199  T
Q  478 tagagtttatggagagagatg 498  Q
    ||| |||| ||||||||||||    
T  3174198 tagggtttgtggagagagatg 3174178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 10572786 - 10572717
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  10572786 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 10572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 28450772 - 28450712
Alignment:
Q  144 ttgttcctaaaccaagaacattgaaaaacacagcataatactaaaacaaaaacataacata 204  Q
    |||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  28450772 ttgttccttaaccaaaaacattgaaaaacacaacatagtactaaaacaaaaacataacata 28450712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 512
Target Start/End: Complemental strand, 32863727 - 32863643
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagat-gagataactctctaa 512  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||  ||| |||||| ||||||||    
T  32863727 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagatggatggagatagctctctaa 32863643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19208201 - 19208261
Alignment:
Q  1 gcttttgatatcgccgtgtttgtaagtaactgcga-ttcatgctgcatcaacaacatttga 60  Q
    |||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||    
T  19208201 gcttttgatatcgccgcgtttgtaagtaacagcgatttcaggctgcatcaacatcatttga 19208261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 28451169 - 28451131
Alignment:
Q  83 tgcaaaggaaaaagagggttttcatcaaactgctttgaa 121  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  28451169 tgcaaaggaaaaagaggcttttcatcaaactgctttgaa 28451131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23738914 - 23738854
Alignment:
Q  1 gcttttgatatcgccgtgtttgtaagtaactgcga-ttcatgctgcatcaacaacatttga 60  Q
    |||||||||||||||| |||||||||| || |||| |||| |||||||||||| |||||||    
T  23738914 gcttttgatatcgccgcgtttgtaagttacagcgatttcaggctgcatcaacatcatttga 23738854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28451802 - 28451759
Alignment:
Q  1 gcttttgatatcgccgtgtttgtaagtaactgcgattcatgctg 44  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||    
T  28451802 gcttttgatgtcgccgcgtttgtaagtaactgcgattcaggctg 28451759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 44660820 - 44660284
Alignment:
Q  1 gcttttgatatcgccgtgtttgtaagtaactgcgattcatgctgcatcaacaacatttgataaacagcaggctttgattcaatgcaaaggaaaaagaggg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  44660820 gcttttgatatcgccgcgtttgtaagtaactgcgattcatgctgcatcaacaacatttgataaacagcaggctttgattcaatgcaaaggaaaaagagac 44660721  T
Q  101 ttttcatcaaactgctttgaataaataacatttgttattgtatttgttcctaaaccaagaacattgaaaaacacagcataatactaaaacaaaaacataa 200  Q
    ||||||||||||||||| ||||||| |||||||||||||||      ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44660720 ttttcatcaaactgcttcgaataaacaacatttgttattgt------tcctaaaccaagaacattgaaaaacacagcatagtactaaaacaaaaacataa 44660627  T
Q  201 catagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacctccattttagcataaagacccaaacatacataaat-tttt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||| ||||    
T  44660626 catagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaaccaccattttagcataaagacacaaactttcataaatctttt 44660527  T
Q  300 gatgacccatttcacagaacatttcatacagcaatcaagacatgtattcactaatcaactaggtttaacaacaacagatggaaaactcattgaaatcaac 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44660526 gatgacccatttcacagaacatttcatacagcaaacaagacatgtattcactaatcaactaggtttaacaacaacggatggaaaactcattgaaatcaac 44660427  T
Q  400 taaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagaga 494  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  44660426 taaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaattagggtttatggagaga 44660327  T
Q  495 gatgagataactctctaatcaacacagaaaacggaggaggatg 537  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  44660326 gatgagataactctctaatcaacacagaaaacgcaggaggatg 44660284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 6472280 - 6472349
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  6472280 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 6472349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 9371890 - 9371821
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  9371890 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 9371821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 21358058 - 21358127
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  21358058 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 21358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 35013010 - 35013079
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  35013010 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 35013079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 31419345 - 31419280
Alignment:
Q  427 atttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||||| |||| |||||||||||||  ||||||||  ||||||||| |||||| |||| ||||||    
T  31419345 atttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 31419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 62 - 512
Target Start/End: Complemental strand, 43916552 - 43916100
Alignment:
Q  62 aaacagcaggctttgattcaatgcaaaggaaaaa-gagggttttcatcaaactgctttgaataaataacatttgttattgtatttgttcctaaaccaaga 160  Q
    ||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||      |||||||||||||    
T  43916552 aaacaacatgctttgattcaatgcaaaggaaaaaagaggtttttcatcaaactgctttgaataaacagcatttgttattgt------tcctaaaccaaga 43916459  T
Q  161 acattgaaaaacacagcataatactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacc 260  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  43916458 acattgaaaaacacaacatagtactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaattgtacactaaatcactttccaacc 43916359  T
Q  261 tccattttagcataaagacccaaacatacataaattt-ttgatgacccatttcacagaacatttcatacagcaatcaagacatgtattcactaatcaact 359  Q
     |||||||||||||||||| ||||| | ||||||    || ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  43916358 accattttagcataaagacacaaactttcataaaaaaatttatgacccatttcacagaacatttcatacagcaaacaagacatgtaatcactaatcaact 43916259  T
Q  360 aggtttaacaacaacagatggaaaactcattgaaatcaactaaagaacatgtaatcattaaagaa-----aaatttgaacgaaattacattcaatttcac 454  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||| |||| ||||||||     | ||||||| ||||||||||| || |||||    
T  43916258 aggtttaacaacaacagatggaaaactcatggcaatcaactaaataacatgcaatcgttaaagaagaatcagatttgaaggaaattacattaaaattcac 43916159  T
Q  455 attaccttataatttacaacaattagagtttatggagagagat-gagataactctctaa 512  Q
    ||| ||||| ||||||||||||| || |||||||||||||||| |||||| ||||||||    
T  43916158 atttccttacaatttacaacaatcagggtttatggagagagatggagatagctctctaa 43916100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 383 - 512
Target Start/End: Original strand, 38521211 - 38521346
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| | ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  38521211 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 38521310  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||||||||||||    
T  38521311 tagggtttgtggagagagatggagataactctctaa 38521346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 1668239 - 1668104
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| | ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  1668239 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 1668140  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||| ||||||||    
T  1668139 tagggtttgtggagagagatggagatagctctctaa 1668104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 16658954 - 16658819
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| | ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  16658954 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 16658855  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||| ||||||||    
T  16658854 tagggtttgtggagagagatggagatagctctctaa 16658819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 22432327 - 22432396
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  22432327 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 22432396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 27576846 - 27576777
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  27576846 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 27576777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 29182611 - 29182680
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  29182611 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 29182680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 485
Target Start/End: Complemental strand, 22014969 - 22014862
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| |||||||||||||||| |||||||||| ||| || |||     ||||| |||||||||||||||||||||||| |||| || ||||||||||    
T  22014969 aactcatggaaatcaactaaagaatatgtaatcatcaaacaataatcataattgaaggaaattacattcaatttcacattaacttacaagttacaacaat 22014870  T
Q  478 tagagttt 485  Q
    ||| ||||    
T  22014869 tagggttt 22014862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 492
Target Start/End: Original strand, 774716 - 774780
Alignment:
Q  429 ttgaacgaaattacattcaa-tttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||    
T  774716 ttgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggaga 774780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 11472395 - 11472451
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  11472395 ttgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttt 11472451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43916816 - 43916758
Alignment:
Q  1 gcttttgatatcgccgtgtttgtaagtaactgcgattcatgctgcatcaacaacatttg 59  Q
    ||||||||||||||||  ||||||||||||| ||||||| ||| |||||||||||||||    
T  43916816 gcttttgatatcgccgcatttgtaagtaactacgattcaggctacatcaacaacatttg 43916758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 6786521 - 6786451
Alignment:
Q  429 ttgaacgaaattacattcaa-tttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||| |||||||||| ||||||||||||||| || ||||| ||||||| |||| ||||||||||||    
T  6786521 ttgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgtggagagagatg 6786451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 42808752 - 42808687
Alignment:
Q  427 atttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||||| |||| |||||||||||||| ||||||||  ||||||||| |||||| |||| ||||||    
T  42808752 atttgaaggaaaatacattcaatttcatattaccttgcaatttacaagaattagggtttgtggaga 42808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 351 - 538
Target Start/End: Original strand, 17480946 - 17481133
Alignment:
Q  351 taatcaactaggtttaacaacaacagatggaaaactcattgaaatcaactaaagaacatgtaatcattaaagaa-----aaatttgaacgaaattacatt 445  Q
    |||||||||||||||||||||| ||      |||||||| ||||||||  ||||||||||||||||| ||||||     | ||||||| |||| ||||||    
T  17480946 taatcaactaggtttaacaacagca------aaactcatggaaatcaatcaaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacatt 17481039  T
Q  446 caatttcacattaccttataatttacaacaattagagtttatggagagagat-gagataactctctaatcaacacagaaaacggaggaggatgc 538  Q
    |||||||||||||||||| ||||||||| ||||||  ||| ||||||||||| |||||| |||| ||| |||||||||| | ||||||||||||    
T  17481040 caatttcacattaccttacaatttacaagaattaggatttgtggagagagatggagatagctctttaaacaacacagaagatggaggaggatgc 17481133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 498
Target Start/End: Complemental strand, 48184352 - 48184253
Alignment:
Q  398 actaaagaacatgtaatcattaaagaaaaatttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagat 497  Q
    |||||||||||||||||||| |||  | |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||    
T  48184352 actaaagaacatgtaatcatcaaatcagaatt-gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagat 48184254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 29599287 - 29599356
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  29599287 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 29599356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 324762 - 324693
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| | || ||||||||||||    
T  324762 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgtggagagagatg 324693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 26014550 - 26014504
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaaca 475  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||    
T  26014550 ttgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 485
Target Start/End: Original strand, 6165083 - 6165131
Alignment:
Q  437 aattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    |||||||||||||||||||||| |||| || ||||||||||||| ||||    
T  6165083 aattacattcaatttcacattaacttacaagttacaacaattagggttt 6165131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 485
Target Start/End: Original strand, 10801602 - 10801650
Alignment:
Q  437 aattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    |||||||||||||||||||||| |||| || ||||||||||||| ||||    
T  10801602 aattacattcaatttcacattaacttacaagttacaacaattagggttt 10801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 485
Target Start/End: Original strand, 16764571 - 16764619
Alignment:
Q  437 aattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    |||||||||||||||||||||| |||| || ||||||||||||| ||||    
T  16764571 aattacattcaatttcacattaacttacaagttacaacaattagggttt 16764619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 492
Target Start/End: Complemental strand, 26355089 - 26355025
Alignment:
Q  429 ttgaacgaaattacattcaa-tttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||| ||| |||||||||| ||||||||||||||| || ||||||||||||| |||| ||||||    
T  26355089 ttgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggaga 26355025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 20727562 - 20727511
Alignment:
Q  375 agatggaaaactcattgaaatcaactaaagaacatgtaatcattaaagaaaaa 427  Q
    ||||||||||||||| | |||||| |||||||||||||||||| ||| |||||    
T  20727562 agatggaaaactcatggcaatcaa-taaagaacatgtaatcatcaaataaaaa 20727511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 512
Target Start/End: Complemental strand, 2585 - 2466
Alignment:
Q  393 aatcaactaaagaacatgtaatcattaaagaaaaatttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||||||||||||||||||||||| |||  | |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||    
T  2585 aatcaactaaagaacatgtaatcatcaaatcataatt-gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 2487  T
Q  493 gagat-gagataactctctaa 512  Q
    ||||| |||||| ||||||||    
T  2486 gagatggagatagctctctaa 2466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 383 - 512
Target Start/End: Original strand, 13740237 - 13740372
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| ||||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  13740237 aactcatggaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 13740336  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||| ||||||||    
T  13740337 tagggtttgtggagagagatggagatagctctctaa 13740372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 383 - 512
Target Start/End: Original strand, 23218205 - 23218340
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| | ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  23218205 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 23218304  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||||||||||||    
T  23218305 tagggtttgtggagagagatggagataactctctaa 23218340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 21356001 - 21355866
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| ||||||||||||||||||||||||||| |||  | |||     ||||| |||||||||||||||||||| |||||||| || ||||||||||    
T  21356001 aactcatggaaatcaactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacgttaccttacaagttacaacaat 21355902  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||| ||||||||    
T  21355901 tagggtttgtggagagagatggagatagctctctaa 21355866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 45144096 - 45143986
Alignment:
Q  393 aatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttat 487  Q
    ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| |    
T  45144096 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 45143997  T
Q  488 ggagagagatg 498  Q
    |||||||||||    
T  45143996 ggagagagatg 45143986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 45152865 - 45152755
Alignment:
Q  393 aatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttat 487  Q
    ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| |    
T  45152865 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 45152766  T
Q  488 ggagagagatg 498  Q
    |||||||||||    
T  45152765 ggagagagatg 45152755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 21604509 - 21604440
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  21604509 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 21604440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 46164402 - 46164471
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  46164402 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 46164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 47825991 - 47825922
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  47825991 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 47825922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 54785224 - 54785293
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  54785224 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatg 54785293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 8433016 - 8433085
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||| ||||||||||||||||||||||| || | ||||||||||| |||| ||||||||||||    
T  8433016 ttgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgtggagagagatg 8433085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 485
Target Start/End: Complemental strand, 38115524 - 38115468
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  38115524 ttgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttt 38115468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 512
Target Start/End: Original strand, 11154 - 11289
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| ||||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  11154 aactcatggaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 11253  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    |||  ||| ||||||||||| |||||| ||||||||    
T  11254 taggatttgtggagagagatggagatagctctctaa 11289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 512
Target Start/End: Original strand, 3935357 - 3935492
Alignment:
Q  383 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaat 477  Q
    ||||||| | ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  3935357 aactcatggcaatcaactaaagaacatgtaatcatcaaattataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaat 3935456  T
Q  478 tagagtttatggagagagat-gagataactctctaa 512  Q
    ||| |||| ||||||||||| |||||| ||||||||    
T  3935457 tagggtttgtggagagagatggagatagctctctaa 3935492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 25697603 - 25697672
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||| || | ||||||||||| |||| ||||||||||||    
T  25697603 ttgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgtggagagagatg 25697672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 38978409 - 38978478
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||||||||||    
T  38978409 ttgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgtggagagagatg 38978478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 429 - 512
Target Start/End: Original strand, 2338850 - 2338934
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagat-gagataactctctaa 512  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  2338850 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagataactctctaa 2338934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 52893555 - 52893445
Alignment:
Q  393 aatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttat 487  Q
    ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| |    
T  52893555 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 52893456  T
Q  488 ggagagagatg 498  Q
    |||||||||||    
T  52893455 ggagagagatg 52893445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 393 - 496
Target Start/End: Complemental strand, 21239559 - 21239451
Alignment:
Q  393 aatcaactaaagaacatgtaatcattaaagaaaaat-----ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttat 487  Q
    ||||||||||||||||||||||||| |||  | |||     ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| |    
T  21239559 aatcaactaaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 21239460  T
Q  488 ggagagaga 496  Q
    |||||||||    
T  21239459 ggagagaga 21239451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 9456497 - 9456428
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatg 498  Q
    ||||| ||||||||||||||||||||||||||||  || ||||||||||||| |||| ||||||||||||    
T  9456497 ttgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggtttgtggagagagatg 9456428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 40923041 - 40922976
Alignment:
Q  427 atttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||||| |||| |||||||||||||  ||||||||  ||||||||| |||||| |||| ||||||    
T  40923041 atttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 40922976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 1286 - 1216
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagatga 499  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||| | | |||||||||    
T  1286 ttgaaggaaattacattcaatttcacattaccttacaaattacaacaattagtgtttgttgtgagagatga 1216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 492
Target Start/End: Complemental strand, 32397316 - 32397252
Alignment:
Q  429 ttgaacgaaattacattcaa-tttcacattaccttataatttacaacaattagagtttatggaga 492  Q
    ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||    
T  32397316 ttgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggaga 32397252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 9303087 - 9303006
Alignment:
Q  429 ttgaacgaaattacattcaatttcacattaccttataatttacaacaattagagtttatggagagagat-gagataactctct 510  Q
    ||||| ||||||||||||||||||||||||||||  || ||  ||||||||| |||| ||||||||||| |||||||||||||    
T  9303087 ttgaaggaaattacattcaatttcacattacctttcaagtt-taacaattagggtttgtggagagagatggagataactctct 9303006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 968 - 1018
Alignment:
Q  435 gaaattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  968 gaaattacattcaatttcacattaccttacaaattacaacaattagggttt 1018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 755 - 802
Alignment:
Q  369 aacaacagatggaaaactcattgaaatcaactaaagaacatgtaatca 416  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  755 aacaatagatggaaaactcatggtaatcaactaaagaacatgtaatca 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 485
Target Start/End: Original strand, 8417 - 8465
Alignment:
Q  437 aattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    |||||||||||||||||||||| |||| || ||||||||||||| ||||    
T  8417 aattacattcaatttcacattaacttacaagttacaacaattagggttt 8465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 2938 - 2890
Alignment:
Q  437 aattacattcaatttcacattaccttataatttacaacaattagagttt 485  Q
    |||||||||||||||||||||| |||| || ||||||||||||| ||||    
T  2938 aattacattcaatttcacattaacttacaagttacaacaattagggttt 2890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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