View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_4 (Length: 454)
Name: NF10126_low_4
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_4 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 437
Target Start/End: Original strand, 79361 - 79797
Alignment:
| Q |
14 |
gaaaatatggtggagttagaaacatattaaagtggtaaaacaccatttatgtgagacaaatacaaagtcaaaggcacattacaaaattaagaagaattaa |
113 |
Q |
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|||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
79361 |
gaaaatatagtggagttaaaaacaaaataaagtggtaaaacaccatttatgtgagacaaatgcaaagtcaaaggcacgttacaaaattaagaagaattaa |
79460 |
T |
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| Q |
114 |
ggtggaattgatagaaataaaatcaatattaagagattatatatcctag-tcaaaggtacccataaattaaaatgggaggtaggtactgatttggctaaa |
212 |
Q |
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|||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
79461 |
ggtggaattgatggaaataaaatcaatattaaaagat----tatcctagttcaaaggtacccataaattaaaatgggaggtaggtactgatttggctaca |
79556 |
T |
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| Q |
213 |
cgacattactgagtttgcc--------------------aagagatcctaataagggacatacatcaattaaagaaatcaatttcgtacgtcaacaatca |
292 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||| |||||||| ||| |
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| T |
79557 |
cgactttactgagtttgcctaaataaaagattggtaattaagagatcctaataagtgacatacataaattagagaaatcaattt----cgtcaacactca |
79652 |
T |
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| Q |
293 |
tttcattgagtattaggggaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatcagcaagcaatagtttaggc |
392 |
Q |
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||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
79653 |
tttgattgagtattagggaaatcaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcaacaagcaatagtttaggc |
79752 |
T |
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| Q |
393 |
atgtaataagaggaaaacaataataaaggtgtatttgcaagttac |
437 |
Q |
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| T |
79753 |
atgtaataagaggaaaacaataataaaggtgtatttgcaagttac |
79797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 35410608 - 35410189
Alignment:
| Q |
12 |
aagaaaatatggtggagttagaaacatattaaagtggtaaaacaccatttatgtgagacaaatacaaagtcaaaggcacattacaaaatt-aagaagaat |
110 |
Q |
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| T |
35410608 |
aagaaaatatggtggagttaaaaacaaattaaagtggtaaaacaccatttatgtgagacaaatgcaaagtcaaaggcacgttacaaaatttaattagaat |
35410509 |
T |
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| Q |
111 |
taaggtggaattgatagaaataaaatcaatattaagagattatatatcctagtcaaaggtacccataaattaaaatgggaggtaggtactgatttggcta |
210 |
Q |
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||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
35410508 |
taaggtggaattgatggaaataaaatcagtattaaaagattat----cctagtcaaaggtacccataaattaaaatgggaggtagggattgatttggcta |
35410413 |
T |
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| Q |
211 |
aacgacattactgagtttgcc--------------------aagagatcctaataagggacatacatcaattaaagaaatcaatttcgtacgtcaacaat |
290 |
Q |
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| T |
35410412 |
cacgactttattgagtttgcataaataaaggattggtaattaagagatcctaataagtgacatacatcagttagagaaatcaattt----cgtcaacact |
35410317 |
T |
|
| Q |
291 |
catttcattgagtattaggggaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatcagcaagcaatagtttag |
390 |
Q |
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| T |
35410316 |
catttcat-------------------ttgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcagcaaacaatagtttag |
35410236 |
T |
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| Q |
391 |
gcatgtaataagaggaaaacaataataaaggtgtatttgcaagttac |
437 |
Q |
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| T |
35410235 |
gcatgtagtaagaggaaaacaataataaaggtgtatttgcaagttac |
35410189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 127 - 437
Target Start/End: Complemental strand, 24757154 - 24756832
Alignment:
| Q |
127 |
gaaataaaatcaatattaagagattatatatcctagtcaaaggtacccataaattaaaatgggaggtaggtactgatttggctaaacgacattactgagt |
226 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
24757154 |
gaaataaaatcaatattaaaagattat----ccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttggctacacgactttactgagt |
24757059 |
T |
|
| Q |
227 |
ttgcc--------------------aagagatcctaataagggacatacatcaattaaagaaatcaatttcgtacgtcaacaatcatttcattgagtatt |
306 |
Q |
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| T |
24757058 |
ttgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgt----caacactcatttcattgagtatt |
24756963 |
T |
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| Q |
307 |
aggggaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatcagcaagcaatagtttaggcatgtaataagagga |
406 |
Q |
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| T |
24756962 |
agggaaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcagcaagcaatagtttaggcatgtaataagagga |
24756863 |
T |
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| Q |
407 |
aaacaataataaaggtgtatttgcaagttac |
437 |
Q |
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| T |
24756862 |
aaacaataataaaggtgtatttgtaagttac |
24756832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 127 - 437
Target Start/End: Complemental strand, 24766151 - 24765829
Alignment:
| Q |
127 |
gaaataaaatcaatattaagagattatatatcctagtcaaaggtacccataaattaaaatgggaggtaggtactgatttggctaaacgacattactgagt |
226 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
24766151 |
gaaataaaatcaatattaaaagattat----ccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttggctacacgactttactgagt |
24766056 |
T |
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| Q |
227 |
ttgcc--------------------aagagatcctaataagggacatacatcaattaaagaaatcaatttcgtacgtcaacaatcatttcattgagtatt |
306 |
Q |
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||||| |||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
24766055 |
ttgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgt----caacactcatttcattgagtatt |
24765960 |
T |
|
| Q |
307 |
aggggaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatcagcaagcaatagtttaggcatgtaataagagga |
406 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24765959 |
agggaaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcagcaagcaatagtttaggcatgtaataagagga |
24765860 |
T |
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| Q |
407 |
aaacaataataaaggtgtatttgcaagttac |
437 |
Q |
| |
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||||||||||||||||||||||| ||||||| |
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| T |
24765859 |
aaacaataataaaggtgtatttgtaagttac |
24765829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 281 - 437
Target Start/End: Original strand, 3929341 - 3929506
Alignment:
| Q |
281 |
cgtcaacaatcatttcattgagtattaggggaatt------aattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatca |
374 |
Q |
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|||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929341 |
cgtcaacattcatttcattgaatattaggggaattataattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatca |
3929440 |
T |
|
| Q |
375 |
gcaagc---aatagtttaggcatgtaataagaggaaaacaataataaaggtgtatttgcaagttac |
437 |
Q |
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|||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3929441 |
gcaagcaaaaaaagtttagacatgtaataagaggaaagcaataataaaggtgtatttgcaagttac |
3929506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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