View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_5 (Length: 437)
Name: NF10126_low_5
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 1382698 - 1382290
Alignment:
| Q |
1 |
tttcttttttcatctgcattcacaaaggaggtaaatatgtaggttttgtaacaaaatctcataaaagttctctaaatattcgtgtgatttcaggtccata |
100 |
Q |
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| T |
1382698 |
tttcttttttcatctacattcacaaaggaggtaaatatgtaggttttgtaacaaaatctcataaaagttctctaaatattcgtgtgatttcaggtccata |
1382599 |
T |
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| Q |
101 |
cgatgctaagcgtctgtttaaggaatcctgtgaaggtacaaccttaattgtttacaaatattatcttcaaatctcctgcttgactcatgttattcacaat |
200 |
Q |
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| T |
1382598 |
cgatgctaagcgtctgtttaaggaatcctgtgaaggtacaaccttaattg--------------cttcaaatctcctgcttgactcatgttattcacaat |
1382513 |
T |
|
| Q |
201 |
ataannnnnnnn-attttgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttgctttgtgcaaaaagaaaaacataagg |
299 |
Q |
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| T |
1382512 |
ataatttttttttattttgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttgctttatgcaaaaagaaaaacataagg |
1382413 |
T |
|
| Q |
300 |
tttctcttctcccttgtccagaaaatgttgaatatcttactgttagaagaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagtagtag |
399 |
Q |
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| T |
1382412 |
tttctcttctcccttgtccagaaaatgttgaatatcttactgttagaagaggacaaattagaagttttattttatgtttggtgtgtattaaaagttgtag |
1382313 |
T |
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| Q |
400 |
actag-aacatctagttccattt |
421 |
Q |
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| T |
1382312 |
actagtaacatctagttccattt |
1382290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 126 - 395
Target Start/End: Complemental strand, 7317235 - 7316962
Alignment:
| Q |
126 |
tcctgtgaaggtacaaccttaattgtttacaaatattatcttcaaatctcctgcttgactcatgttattcacaatataannnnnnnn--attttgtatag |
223 |
Q |
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| T |
7317235 |
tcctgtgaaggtacaaccttaat-gtttccaaatattatcttcaaatctcctgcttgactcatgttattcacaatatatatatatttttattctgtatag |
7317137 |
T |
|
| Q |
224 |
attgacctgtctaccaaatattctattgcggacacactgcagcagagttgctttgtgcaaa---aagaaaaacataaggtttctcttctcccttgtccag |
320 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||| |
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| T |
7317136 |
attgacctatcttccaaatattctattgcggacacactgcagcagagttgctttaaatttatgcaagaaaatcataaggtttatcttctcccttgtccag |
7317037 |
T |
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| Q |
321 |
aaaatgttgaatatcttactgttagaagaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagta |
395 |
Q |
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| T |
7317036 |
aaaatgttgaatatcttactgttagaacaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagta |
7316962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 7039628 - 7039552
Alignment:
| Q |
83 |
tgtgatttcaggtccatacgatgctaagcgtctgtttaaggaatcctgtgaaggtacaaccttaattgtttacaaata |
160 |
Q |
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| T |
7039628 |
tgtgatttcaggtcgatatgatccaaagtgtgtttttaaggaatcctgtgaaggtacaaccgtaa-tgtttacaaata |
7039552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 20521817 - 20521784
Alignment:
| Q |
115 |
tgtttaaggaatcctgtgaaggtacaaccttaat |
148 |
Q |
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| T |
20521817 |
tgtttaaggaatcctgtgaaggtacaaccataat |
20521784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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