View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10126_low_6 (Length: 423)
Name: NF10126_low_6
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_6 |
 | |
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| [»] scaffold0386 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 1207 - 796
Alignment:
| Q |
12 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1207 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
1108 |
T |
|
| Q |
112 |
ggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1107 |
ggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttt |
1008 |
T |
|
| Q |
212 |
taataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1007 |
taataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatga |
908 |
T |
|
| Q |
312 |
acatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
907 |
acatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacg |
808 |
T |
|
| Q |
412 |
ttgcaaaaggat |
423 |
Q |
| |
|
|||||||||||| |
|
|
| T |
807 |
ttgcaaaaggat |
796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 33878746 - 33879157
Alignment:
| Q |
12 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33878746 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
33878845 |
T |
|
| Q |
112 |
ggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33878846 |
ggatccaaatcatgcggagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttt |
33878945 |
T |
|
| Q |
212 |
taataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33878946 |
taataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatga |
33879045 |
T |
|
| Q |
312 |
acatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33879046 |
acatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacg |
33879145 |
T |
|
| Q |
412 |
ttgcaaaaggat |
423 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33879146 |
ttgcaaaaggat |
33879157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 46673679 - 46673718
Alignment:
| Q |
58 |
aattgtgaagatggttatggctcatcgactactcattgca |
97 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
46673679 |
aattgtgaagatggttatgactcatccactactcattgca |
46673718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 13869366 - 13869770
Alignment:
| Q |
12 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
111 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
13869366 |
aaccggtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatggttatgtctcatccactgctcattgtaacaccataattaac |
13869465 |
T |
|
| Q |
112 |
ggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttt |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13869466 |
ggatccaaatcatgtagagattgtttctaaatcatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattctattaaaatagttagttt |
13869565 |
T |
|
| Q |
212 |
taataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatga |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13869566 |
taataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggtt----- |
13869660 |
T |
|
| Q |
312 |
acatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaag |
411 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13869661 |
--atgttcctagattttcagaaacactaatagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccacg |
13869758 |
T |
|
| Q |
412 |
ttgcaaaaggat |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
13869759 |
atgcaaaaggat |
13869770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 194 - 423
Target Start/End: Original strand, 27641144 - 27641373
Alignment:
| Q |
194 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
27641144 |
tattaaaatagttagttttaataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgacatatggtgggtgaatg |
27641243 |
T |
|
| Q |
294 |
nnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27641244 |
tttttttaaggttgatgaacatgttcctagattttcagaaacactaatagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
27641343 |
T |
|
| Q |
394 |
gacatgatctataccaagttgcaaaaggat |
423 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |
|
|
| T |
27641344 |
gacatgatctataccacgatgcaaaaggat |
27641373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 27641005 - 27641129
Alignment:
| Q |
17 |
gtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaacggatc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
27641005 |
gtggaataattctagaaacgccaaacttctcttgttgtttaaattatgaagatggttatgtctcatccactgctcattgtaacaccataattaacggatc |
27641104 |
T |
|
| Q |
117 |
caaatcatgcagagattgtttctaa |
141 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
27641105 |
caaatcatgtagagattgtttctaa |
27641129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 29735634 - 29735226
Alignment:
| Q |
12 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
111 |
Q |
| |
|
|||| |||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
29735634 |
aaccggtggaataattctaaaaatgccaaattcctcttgttgtttaaattgtgaagatggttatgtctcatc------tcattgcaacaccataattaac |
29735541 |
T |
|
| Q |
112 |
ggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttt |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
29735540 |
ggatccaaatcatgtagagattgtttctaaaccatactgtattgggtgttattgcaatccaatcgagcaatgggttaaattctattaaaatagttagttt |
29735441 |
T |
|
| Q |
212 |
taataacttt------gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggt |
305 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29735440 |
taataactttttgtatgcatttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggt |
29735341 |
T |
|
| Q |
306 |
tgatgaacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctat |
405 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29735340 |
tgatgaacatgttcctagattttcataaacactattagagaaatattaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctat |
29735241 |
T |
|
| Q |
406 |
accaagttgcaaaag |
420 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
29735240 |
accacgatgcaaaag |
29735226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 8720808 - 8720845
Alignment:
| Q |
58 |
aattgtgaagatggttatggctcatcgactactcattg |
95 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
8720808 |
aattgtgaagatggttatgtctcatccactactcattg |
8720845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 49851337 - 49850939
Alignment:
| Q |
17 |
gtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaacggatc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||||||||| |
|
|
| T |
49851337 |
gtggaataattctagaaacgccaaacttcccttgttgtttaaattgtgaagatggttatgtctcatccactgcttattgtaacaccataatta------- |
49851245 |
T |
|
| Q |
117 |
caaatcatgcagagattgtttctaaaccatgctgtattgggtgttatt---gcaatccaatcgagcaatgggtcaaattatattaaaatagttagtttta |
213 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49851244 |
-------tgtagagattgtttctaaatcatgctgtattgggtgttattattgcaatccaattgagcaatgggtcaaattctattaaaatagttagtttta |
49851152 |
T |
|
| Q |
214 |
ataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttga---tg |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || |
|
|
| T |
49851151 |
ataactttgcatttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatgatggccgaatgtttttttaaggttgatattg |
49851052 |
T |
|
| Q |
311 |
aacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaa |
410 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49851051 |
aacatgttcctagattttcagaaatactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccac |
49850952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 38460553 - 38460702
Alignment:
| Q |
12 |
aacctgtggaataattctagaaactccaaacttctcttgttgtttaaattgtgaagatggttatggctcatcgactactcattgcaacaccataattaac |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
38460553 |
aacctgtggaataagtctagaaactccaaatatctcttgttgtttaaattgtgaagatggttatgtctcatccactgctcattgcaacaccataattaac |
38460652 |
T |
|
| Q |
112 |
ggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgtt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38460653 |
ggatccaaatcatgcagagattgtttctaaaccatgttgtattgggtgtt |
38460702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 38460745 - 38460823
Alignment:
| Q |
345 |
gaaatataaaacaagaacatagattcagtttatgagcgattcaaaataagacatgatctataccaagttgcaaaaggat |
423 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38460745 |
gaaatataaaacaagaacatagatttagtttatgagcgattcaaaataagacatgatctataccacgttgcaaaaggat |
38460823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 38460700 - 38460749
Alignment:
| Q |
208 |
gttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38460700 |
gttttaataactttgcatttggaaattcaaatctcttgaaaggttgaaat |
38460749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 44428158 - 44428119
Alignment:
| Q |
58 |
aattgtgaagatggttatggctcatcgactactcattgca |
97 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
44428158 |
aattgtgaagatggttatgtctcatccactactcattgca |
44428119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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