View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_7 (Length: 379)
Name: NF10126_low_7
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 56240939 - 56241294
Alignment:
| Q |
1 |
tgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattactatcaagaataagaatgggtttatttgt |
100 |
Q |
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| T |
56240939 |
tgacttgtgccttatcttcctcctgcttgtgtttgattctgacaaccttgtccaccttttctttacaattactatcaagaat------ggatttatttgt |
56241032 |
T |
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| Q |
101 |
tagacgggactttctcctgaagagcttcttcttcnnnnnnnnnnnnnnnnnnnccctgcaaacaaatccaatata--------ctttatttttaagaaca |
192 |
Q |
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| T |
56241033 |
tagacgggactttctcctgaagagcttcttcttctgatgatgatgat------ccctgcaaacaaatccaatatatattcaatctatatttttaagaaca |
56241126 |
T |
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| Q |
193 |
actccaagcatcgtaatcaattaatcagagaataattgaagtgactaactctgcattaggttgattttgaaagacttgtttcaaagacatgtccattaac |
292 |
Q |
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| T |
56241127 |
actccaaccatcgtaatcaattaatcagagaataattgaa-taactaactctgcattaggttgattttgaaagacttgtttcaaagacatgtccattaac |
56241225 |
T |
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| Q |
293 |
tcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgttgaggtggtaat |
361 |
Q |
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| T |
56241226 |
tcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgttgaggtggtaat |
56241294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23947233 - 23947305
Alignment:
| Q |
1 |
tgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattact |
73 |
Q |
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| T |
23947233 |
tgacttgtgccttatcttcctcctgcttctgtttgattctgacaacctcctccaccttttctttacaattact |
23947305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 23947605 - 23947671
Alignment:
| Q |
259 |
ttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacg |
325 |
Q |
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| T |
23947605 |
ttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacg |
23947671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 23947405 - 23947454
Alignment:
| Q |
83 |
aagaatgggtttatttgttagacgggactttctcctgaagagcttcttct |
132 |
Q |
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| T |
23947405 |
aagaatgggtttatttgttagacgagactttctccttaattgcttcttct |
23947454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16105711 - 16105639
Alignment:
| Q |
1 |
tgacttgtgacttatcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattact |
73 |
Q |
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| T |
16105711 |
tgacttgtgccttatcttcctcctgcttctgtttgattctgacaacctcctccaccttttctttacaattact |
16105639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 16105335 - 16105269
Alignment:
| Q |
259 |
ttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacg |
325 |
Q |
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| T |
16105335 |
ttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacg |
16105269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 16105535 - 16105486
Alignment:
| Q |
83 |
aagaatgggtttatttgttagacgggactttctcctgaagagcttcttct |
132 |
Q |
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| T |
16105535 |
aagaatgggtttatttgttagacgagactttctcctgaattgcttcttct |
16105486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 16623958 - 16623900
Alignment:
| Q |
15 |
tcttcctcctgcttgtgtttgattctgacaacctcgtccaccttttctttacaattact |
73 |
Q |
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| T |
16623958 |
tcttcttcctgcttctgtttgattctcacaaccttctccaccttttctgtacaattact |
16623900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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