View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_8 (Length: 370)
Name: NF10126_low_8
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 4 - 354
Target Start/End: Complemental strand, 39413646 - 39413298
Alignment:
| Q |
4 |
ttgtgattcatgatgacgatgagatgtatgaaactgtatctgatgatggtgagatgaatgtggcagataatggtgatggaaattatggtagagatggtga |
103 |
Q |
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| T |
39413646 |
ttgtgattgatgatgatgatgagatgtatgaaactgtatctgatgatggtgagatgaatgtggcagataatggtgatgaaagttgtggtagagatggtga |
39413547 |
T |
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| Q |
104 |
gctgactcaagaaacaattaatccaaagattggactttgcatggcagcactcagggcatttgttgttaagggttgactttatgatcttgtaatatgacac |
203 |
Q |
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| T |
39413546 |
gccgactcaagaaacaattaatccaaagatcggactttgtatggcagcactcagggcatttgttgttaaggattaactttacgaccttgtaatatgacac |
39413447 |
T |
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| Q |
204 |
ttatgtaccaaagaatgtgcttattttggatatgtctgtttgttaagtacttatgcaccaatgatgtgcttattttggtactaatgcactagtaatgtgc |
303 |
Q |
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| T |
39413446 |
ttatgtaccaaggaatgtgcttattttgg--atgtctgtttgttaagtacttatgcaccaatgatgtgcttattttggtagtaatgcactagtaatgtgc |
39413349 |
T |
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| Q |
304 |
ttattttggtcatctttgtaaattatgtacttatgaaccaatgacgtgctt |
354 |
Q |
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| T |
39413348 |
ttattttggttttctttgtaaattatgtacttatgcaccaatgatgtgctt |
39413298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 39402569 - 39402307
Alignment:
| Q |
14 |
tgatgacgatgagatgtatgaaactgtatctgatgatggtgagatgaatgtggcagataatggtgatggaaattatggtagagatggtgagctgactcaa |
113 |
Q |
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| T |
39402569 |
tgatgatgatgagatgtatgcaactgtatctgatgatggtgagatgaatgtggcagataatggagatggaaattgtggtagagatggtgagttaactcaa |
39402470 |
T |
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| Q |
114 |
gaaacaattaatccaaagattggactttgcatggcagcactcagggcatttgttgttaagggttgactttatgatcttgtaatatgacacttatgtacca |
213 |
Q |
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| T |
39402469 |
gaaataattaatccaaagattggactttgtatggcaacactcaaggcatttgttgttaaggattgactttatgatcttgtaatatgatacttatatacta |
39402370 |
T |
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| Q |
214 |
aagaatgtgcttattttggata-tgtctgtttgttaagtacttatgcaccaatgatgtgctta |
275 |
Q |
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| T |
39402369 |
aggaatgtgcttattttggatattttctgtttgttacgtacttatgcactagtaatgtgctta |
39402307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 39413355 - 39413248
Alignment:
| Q |
217 |
aatgtgcttattttggatatgtctgtttgttaagtacttatgcaccaatgatgtgcttattttggtactaatgcactagtaatgtgcttattttggtcat |
316 |
Q |
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| T |
39413355 |
aatgtgcttattttggttttctttgtaaattatgtacttatgcaccaatgatgtgcttattttggtactaatacactaataatgtgcatattttagatat |
39413256 |
T |
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| Q |
317 |
ctttgtaa |
324 |
Q |
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| T |
39413255 |
ctttgtaa |
39413248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 39402332 - 39402259
Alignment:
| Q |
281 |
gtactaatgcactagtaatgtgcttattttggtcatctttgtaaattatgtacttatgaaccaatgacgtgctt |
354 |
Q |
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| T |
39402332 |
gtacttatgcactagtaatgtgcttactatggtcatctttgtaagttatgtacttatgccccaatgatgtgctt |
39402259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 39402288 - 39402207
Alignment:
| Q |
245 |
gttaagtacttatgcaccaatgatgtgcttattttggtactaat--gcactagtaatgtgcttattttggtcatctttgtaa |
324 |
Q |
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| T |
39402288 |
gttatgtacttatgccccaatgatgtgcttattttggtactaatacacactaataatgtgcttattttagatatctttgtaa |
39402207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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