View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10126_low_9 (Length: 358)
Name: NF10126_low_9
Description: NF10126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10126_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 3 - 340
Target Start/End: Complemental strand, 52709156 - 52708819
Alignment:
| Q |
3 |
gttaagaagaaagtacctggtaaatctgtactggaaaagctggcaaacatccctcccaaacccaagatcttagaatgagaagtgctgctggaaaaagcag |
102 |
Q |
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| T |
52709156 |
gttaaaaagaaagtacctggtaaatctgtactggaaaagctggcaaacatccctcccaaacccaagatcttagaatgagaagtgctgctggaaaaagcag |
52709057 |
T |
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| Q |
103 |
gaatagcagagcagttctatcctgaacaaaagatgtgccgttttcataaaagtttcacaaacatnnnnnnnnnnnnnnnnnncgcggatgggcatcagca |
202 |
Q |
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| T |
52709056 |
gaatagcagagcagttctatcctgaacaaaagatgtgccattttcataaaagtttcacaaacattgtgttgtgttgtgagtgcgcggatgggcatcagca |
52708957 |
T |
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| Q |
203 |
ataaggtgtgggatattgcggtgttactgcgacatgttatgtcactgatggtgaattcgagaaataggccaagttcacttgattcaactcatgcctaggc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
52708956 |
ataaggtgtgggatattgcggtgttactgcgacatgttatgtcactgatggtgaattcgagaaataggccaagttcccttgattccactcatgcctaggc |
52708857 |
T |
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| Q |
303 |
atgtagttgttgtcattgactttttaactaggtgttag |
340 |
Q |
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||||||||||||| ||||||| |||||||||||||||| |
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| T |
52708856 |
atgtagttgttgttattgactctttaactaggtgttag |
52708819 |
T |
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