View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10127_low_11 (Length: 256)
Name: NF10127_low_11
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10127_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 27307448 - 27307628
Alignment:
| Q |
1 |
cttctatacctcaataatgaatgcaaatgtttgtagaaaatgtgctgcaatagatcaggtagtgctatttcttgctagtcacaaaattttgttcacggat |
100 |
Q |
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| T |
27307448 |
cttctatacctcaataatgaatgcaaatgtttgtagaaaatgtgctgcaataga---ggtagtgctatttcttgctagtcacaactttttgttcacggat |
27307544 |
T |
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| Q |
101 |
ttttctagaatttgaagctaagaatataaaaacaaaatcacatttataaaaaatttcacatccaacaattcagatgcaatctga |
184 |
Q |
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| T |
27307545 |
atttctagaatttgaagctaagaatgtaaaaacaaaatcacatttataaaaaatttcatatccaacaattcagatgcaatctga |
27307628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 27307626 - 27307658
Alignment:
| Q |
203 |
tgaaaatttcctaatttgttgcaatgatatata |
235 |
Q |
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| T |
27307626 |
tgaaaatttcctaatttgttgcaatgatatata |
27307658 |
T |
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