View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10127_low_12 (Length: 242)

Name: NF10127_low_12
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10127_low_12
NF10127_low_12
[»] chr4 (13 HSPs)
chr4 (20-202)||(50999431-50999613)
chr4 (118-204)||(50998853-50998939)
chr4 (160-222)||(49574727-49574789)
chr4 (180-230)||(43428471-43428521)
chr4 (155-230)||(19638098-19638173)
chr4 (181-230)||(51208811-51208860)
chr4 (180-220)||(5941386-5941426)
chr4 (182-230)||(17736576-17736624)
chr4 (182-230)||(21436553-21436601)
chr4 (147-187)||(56573771-56573811)
chr4 (180-215)||(33581140-33581175)
chr4 (182-230)||(31136024-31136072)
chr4 (157-189)||(56574299-56574331)
[»] chr8 (13 HSPs)
chr8 (20-230)||(23546749-23546959)
chr8 (113-230)||(23546140-23546257)
chr8 (154-227)||(36697680-36697753)
chr8 (149-230)||(16723678-16723759)
chr8 (149-229)||(43307416-43307496)
chr8 (149-226)||(37550998-37551075)
chr8 (119-228)||(43306683-43306792)
chr8 (180-230)||(9044181-9044231)
chr8 (180-224)||(37811170-37811214)
chr8 (159-198)||(31287053-31287092)
chr8 (180-215)||(44495131-44495166)
chr8 (180-230)||(24287617-24287667)
chr8 (182-230)||(28540372-28540420)
[»] chr6 (10 HSPs)
chr6 (137-215)||(19284285-19284363)
chr6 (119-187)||(20378894-20378963)
chr6 (119-187)||(19825014-19825083)
chr6 (180-230)||(15997538-15997588)
chr6 (180-215)||(4279096-4279131)
chr6 (180-215)||(4284352-4284387)
chr6 (155-230)||(20508606-20508681)
chr6 (182-226)||(20756414-20756458)
chr6 (181-221)||(32261204-32261244)
chr6 (180-230)||(12796033-12796083)
[»] chr5 (9 HSPs)
chr5 (119-226)||(35424265-35424372)
chr5 (114-187)||(13772871-13772945)
chr5 (155-230)||(14098491-14098566)
chr5 (154-212)||(10470073-10470131)
chr5 (180-230)||(12696478-12696528)
chr5 (180-215)||(11448584-11448619)
chr5 (148-187)||(13772277-13772316)
chr5 (153-212)||(33574002-33574061)
chr5 (180-212)||(30576042-30576074)
[»] scaffold0285 (1 HSPs)
scaffold0285 (149-230)||(17511-17592)
[»] chr3 (14 HSPs)
chr3 (160-221)||(29749318-29749379)
chr3 (119-221)||(103754-103856)
chr3 (181-230)||(54516957-54517006)
chr3 (180-223)||(47393895-47393938)
chr3 (177-230)||(31595130-31595183)
chr3 (177-230)||(31595860-31595913)
chr3 (182-230)||(54524693-54524741)
chr3 (160-203)||(11617438-11617481)
chr3 (180-215)||(24515929-24515964)
chr3 (159-230)||(40934812-40934883)
chr3 (180-215)||(55058525-55058560)
chr3 (180-230)||(36244153-36244203)
chr3 (150-198)||(104492-104540)
chr3 (180-212)||(48058288-48058320)
[»] chr7 (8 HSPs)
chr7 (180-230)||(19068460-19068510)
chr7 (180-230)||(43448522-43448572)
chr7 (163-220)||(29064744-29064801)
chr7 (123-198)||(13784068-13784144)
chr7 (180-215)||(14253959-14253994)
chr7 (180-215)||(14255616-14255651)
chr7 (180-230)||(19069254-19069304)
chr7 (154-230)||(45432940-45433016)
[»] scaffold1370 (1 HSPs)
scaffold1370 (149-230)||(197-278)
[»] chr2 (4 HSPs)
chr2 (180-223)||(30784878-30784921)
chr2 (180-223)||(6257770-6257813)
chr2 (182-221)||(25616854-25616893)
chr2 (180-230)||(30266316-30266366)
[»] chr1 (9 HSPs)
chr1 (160-215)||(14235961-14236016)
chr1 (160-221)||(14237366-14237427)
chr1 (167-212)||(15601458-15601503)
chr1 (180-221)||(49359643-49359684)
chr1 (180-220)||(36391358-36391398)
chr1 (180-215)||(44770385-44770420)
chr1 (180-221)||(32994026-32994067)
chr1 (180-221)||(49361980-49362021)
chr1 (180-212)||(2071475-2071507)
[»] scaffold0159 (1 HSPs)
scaffold0159 (180-230)||(28149-28199)
[»] scaffold0069 (1 HSPs)
scaffold0069 (167-204)||(15034-15071)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 50999431 - 50999613
Alignment:
20 ctgggtggggttggatatgtaatgcttctcacaaatattgaacagaaagagaattcgaggaaacagacatgatgggtggcgagagaaatttgatggggcc 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
50999431 ctgggtggggttggatctgtaatgcttctcacaaatattgaacagaaagagaattcgaggaaacagacatgatgggtggcgagagaaatttgatggggtc 50999530  T
120 agcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaa 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
50999531 agcacactttaaaacagaattaattctaaccattaatttaatctaatagctattatgtactcctctcaccctctcatttaaaa 50999613  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 50998939 - 50998853
Alignment:
118 ccagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaag 204  Q
    |||||||||||||||||| |||||||  ||||||||||||| ||||||||| ||||| || ||||| ||||||||||||||||||||    
50998939 ccagcacactttaaaacagaattaatcataaccattaatttgatctaatggttattacgtgctcctatcaccctctcatttaaaaag 50998853  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 49574727 - 49574789
Alignment:
160 atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgt 222  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
49574727 atctaatggttgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgt 49574789  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 43428521 - 43428471
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
43428521 tcctctcaccctctcatttaaaaagtcctctcatttaaaatgccctttata 43428471  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 19638173 - 19638098
Alignment:
155 atttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||| ||||||||| | | || || |||||||||||||||||||||||| ||||||||||| ||||| ||| ||||    
19638173 atttcatctaatggttgtgatttaatcctctcaccctctcatttaaaaattcctctcatttgaaatgccctatata 19638098  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 51208811 - 51208860
Alignment:
181 cctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||| |||| |||||||||||||||||||| |||| ||||||||||||||    
51208811 cctcccaccatctcatttaaaaagtcctcttatttaaaatgtcctctata 51208860  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 5941386 - 5941426
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaat 220  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
5941386 tcctctcaccctctcgtttaaaaagtcctctcatttaaaat 5941426  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 17736624 - 17736576
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||| |||||||||| |||| ||||||||||| ||||||||||||||    
17736624 ctctcatcctctcattttaaaactcctctcatttgaaatgtcctctata 17736576  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 21436601 - 21436553
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||| ||||    
21436601 ctctcaccctctcatttaaaaactcctctcatttgaaatgccctatata 21436553  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 56573811 - 56573771
Alignment:
147 aaccattaatttaatctaatggctattatgtactcctctca 187  Q
    |||||||||||||||||||||||||||||| | ||||||||    
56573811 aaccattaatttaatctaatggctattatgaattcctctca 56573771  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 33581140 - 33581175
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    |||||||||||||||||||||||| |||||||||||    
33581140 tcctctcaccctctcatttaaaaactcctctcattt 33581175  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 31136072 - 31136024
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||| |||||||||| |||| ||||||||||| ||||||||| ||||    
31136072 ctctcatcctctcattttaaaactcctctcatttgaaatgtcctatata 31136024  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 56574299 - 56574331
Alignment:
157 ttaatctaatggctattatgtactcctctcacc 189  Q
    |||||||||||||||||||||| ||||||||||    
56574299 ttaatctaatggctattatgtattcctctcacc 56574331  T

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Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 23546749 - 23546959
Alignment:
20 ctgggtggggttggatatgtaatgcttctcacaaatattgaacagaaagagaattcgaggaaacagacatgatgggtggcgagagaaatttgatggggcc 119  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
23546749 ctgggtggggttcgatctgtaatgcttctcacaaatattgctcagaaagagaattcaaggaaacagacatgatgggtggcgagagaaatttgatggggca 23546848  T
120 agcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaa 219  Q
    |||||||||||||||| ||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||    
23546849 agcacactttaaaacagaattaatcctaaccattattttgatttaatggctattatgtactcctctcaccctctcatttaaaaagctctctcatttgaaa 23546948  T
220 tgtcctctata 230  Q
    || ||| ||||    
23546949 tgccctatata 23546959  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 23546257 - 23546140
Alignment:
113 tggggccagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctca 212  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||    
23546257 tggggccagcacactttaaaacagaattaatcctaaccattattttgatctaatggctattatatactcctctcaccctctcatttaaaatgccctctca 23546158  T
213 tttcaaatgtcctctata 230  Q
    ||| ||||| ||| ||||    
23546157 tttgaaatgccctatata 23546140  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 36697753 - 36697680
Alignment:
154 aatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctct 227  Q
    ||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
36697753 aatttgatctaagggctgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgtcctct 36697680  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 16723759 - 16723678
Alignment:
149 ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||| |||||| |||| |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||    
16723759 ccattaatttgatctaagggctgttatttactcctctcaccctctcattttaaaagtcctctcatttgaaatgccctatata 16723678  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 43307416 - 43307496
Alignment:
149 ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctat 229  Q
    |||||||||| |||||| |||| |||| |||||||||||||||||||||| |||| || |||||||| ||||||| |||||    
43307416 ccattaatttgatctaagggctgttatttactcctctcaccctctcattttaaaaatcatctcatttaaaatgtcttctat 43307496  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 37551075 - 37550998
Alignment:
149 ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctc 226  Q
    ||||| |||||||||||||| | ||||  |||||||||| |||||||||||||||| |||||||||| ||||| ||||    
37551075 ccatttatttaatctaatggttcttattaactcctctcatcctctcatttaaaaagccctctcatttgaaatgccctc 37550998  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 43306792 - 43306683
Alignment:
119 cagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaa 218  Q
    |||||||||||||||  || |||||   | |||||||||| |||||| | || |||| |||||||  ||||||||||||| |||| ||||||||||| ||    
43306792 cagcacactttaaaattaatttaatctgatccattaatttgatctaaggactgttatttactccttccaccctctcattttaaaaatcctctcatttgaa 43306693  T
219 atgtcctcta 228  Q
    ||| ||||||    
43306692 atgccctcta 43306683  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 9044231 - 9044181
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    
9044231 tcctctcaccctctcatttaaaaagtcatctcatttaaaatgccctatata 9044181  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 37811214 - 37811170
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcc 224  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||    
37811214 tcctctcatcctctcatttaaaaagtcatctcatttgaaatgtcc 37811170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 31287053 - 31287092
Alignment:
159 aatctaatggctattatgtactcctctcaccctctcattt 198  Q
    ||||||||||||||||| || |||||||||||||||||||    
31287053 aatctaatggctattatttagtcctctcaccctctcattt 31287092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 44495131 - 44495166
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    |||||||||||||||||||||||| |||||||||||    
44495131 tcctctcaccctctcatttaaaaactcctctcattt 44495166  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 24287617 - 24287667
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||  |||||||||| ||||| ||| ||||    
24287617 tcctctcaccctctcatttaaaaaaccctctcatttgaaatgccctatata 24287667  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 28540372 - 28540420
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||| |||||||||| |||||||||||||||| ||||| ||| ||||    
28540372 ctctcatcctctcattttaaaagtcctctcatttgaaatgccctatata 28540420  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 19284285 - 19284363
Alignment:
137 aattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||    
19284285 aattaatcctaaccattaatttgatctaatggccattatgtactcctctcaccctctcatttaaataaccctctcattt 19284363  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 20378894 - 20378963
Alignment:
119 cagcacactttaaaacaaaattaattc-taaccattaatttaatctaatggctattatgtactcctctca 187  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||  |||||||||||||||||    
20378894 cagcacactttaaaactaaattaaatcataaccattaatttaatctaatggtcattatgtactcctctca 20378963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 19825014 - 19825083
Alignment:
119 cagcacactttaaaacaaaattaattc-taaccattaatttaatctaatggctattatgtactcctctca 187  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||| | ||||| |||||||||||    
19825014 cagcacactttaaaactaaattaaatcataaccattaatttaatctaatgaccattatctactcctctca 19825083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 15997538 - 15997588
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
15997538 tcctctcaccctctcatttaaaaactcctctcatttgaaatgccctctata 15997588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 4279131 - 4279096
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||||||||||||||||||    
4279131 tcctctcaccctctcatttaaaaagtcctctcattt 4279096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 4284352 - 4284387
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||||||||||||||||||    
4284352 tcctctcaccctctcatttaaaaagtcctctcattt 4284387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 20508681 - 20508606
Alignment:
155 atttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||| ||||||||| | | || || ||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    
20508681 atttcatctaatggttgtgatttaatcctctcaccctctcatttaaaaagtcatctcatttgaaatgccctatata 20508606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 20756414 - 20756458
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctc 226  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||    
20756414 ctctcaccctctcatttaaaaactcctctcatttgaaatgccctc 20756458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 32261204 - 32261244
Alignment:
181 cctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    |||||||||||||||||||||||||| |||||||| |||||    
32261204 cctctcaccctctcatttaaaaagtcatctcatttgaaatg 32261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 12796033 - 12796083
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||| ||||||||||||||||| ||| ||||| ||||||| ||||||    
12796033 tcctctcatcctctcatttaaaaagttctcccatttaaaatgtcatctata 12796083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 35424372 - 35424265
Alignment:
119 cagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaa 218  Q
    |||||||||||||||  || |||||   | |||||||||| |||||| |||| |||| |||||||||||||||||||||| |||||||||||||||| ||    
35424372 cagcacactttaaaattaatttaatctgatccattaatttgatctaagggctgttatttactcctctcaccctctcattttaaaagtcctctcatttgaa 35424273  T
219 atgtcctc 226  Q
    ||| ||||    
35424272 atgccctc 35424265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 13772871 - 13772945
Alignment:
114 ggggccagcacactttaaaacaaaatt-aattctaaccattaatttaatctaatggctattatgtactcctctca 187  Q
    |||| ||||||||||||||||  |||| ||| |||||||||||||| |||| |||||||||||||||||||||||    
13772871 gggggcagcacactttaaaactgaatttaatcctaaccattaatttgatcttatggctattatgtactcctctca 13772945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 14098566 - 14098491
Alignment:
155 atttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||| ||||||||| | | || || |||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
14098566 atttcatctaatggttgtgatttaatcctctcaccctctcatttaaaaagtcctctcatttaaaatgccctatata 14098491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 10470131 - 10470073
Alignment:
154 aatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctca 212  Q
    |||||||||||||||||||||   | |||||||| ||||||||||||||| ||||||||    
10470131 aatttaatctaatggctattaatgagtcctctcatcctctcatttaaaaaatcctctca 10470073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 12696528 - 12696478
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    
12696528 tcctctcaccctctcatttaaaaagtcatctcatttgaaatggcctatata 12696478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 11448584 - 11448619
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||| ||||||||||||||    
11448584 tcctctcaccctctcatttaagaagtcctctcattt 11448619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 13772316 - 13772277
Alignment:
148 accattaatttaatctaatggctattatgtactcctctca 187  Q
    ||||||||||| |||||||||||||||||||| |||||||    
13772316 accattaatttgatctaatggctattatgtacccctctca 13772277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 33574002 - 33574061
Alignment:
153 taatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctca 212  Q
    ||||||||||||| ||  ||||| |  ||||||||||||||||||| |||||||||||||    
33574002 taatttaatctaagggtcattatttcatcctctcaccctctcattttaaaagtcctctca 33574061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30576042 - 30576074
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctca 212  Q
    |||||||||||||||||||||||| ||||||||    
30576042 tcctctcaccctctcatttaaaaactcctctca 30576074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 17511 - 17592
Alignment:
149 ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||| |||||||||||||| | ||||  |||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||    
17511 ccatttatttaatctaatggttcttattaactcctctcatcctctcatttaaaaaatcctctcatttgaaatgccctctata 17592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 29749318 - 29749379
Alignment:
160 atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||    
29749318 atctaatagctgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatg 29749379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 103856 - 103754
Alignment:
119 cagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaa 218  Q
    |||||||||||||||  || |||||   | |||||||||| |||||| | || |||| |||||||| |||||||| |||| |||||||||||||||| ||    
103856 cagcacactttaaaattaatttaatctgatccattaatttgatctaaggactgttatttactcctcccaccctcttattttaaaagtcctctcatttgaa 103757  T
219 atg 221  Q
    |||    
103756 atg 103754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 54517006 - 54516957
Alignment:
181 cctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
54517006 cctctcaccctctcatttaaaaactcctctcatttgaaatgccctctata 54516957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 47393938 - 47393895
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtc 223  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
47393938 tcctctcaccctctcatttataaagtcctctcatttgaaatgtc 47393895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 31595183 - 31595130
Alignment:
177 tactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||||| |||||||| || | ||| ||||||||    
31595183 tactcctctcaccctctcatttaaaaactcctctcacttgatatgccctctata 31595130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 31595860 - 31595913
Alignment:
177 tactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||||| |||||||| || | ||| ||||||||    
31595860 tactcctctcaccctctcatttaaaaactcctctcacttgatatgccctctata 31595913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 54524693 - 54524741
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||| |||||||||| |||||||||||||||| ||||||||| ||||    
54524693 ctctcatcctctcattttaaaagtcctctcatttgaaatgtcctatata 54524741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 11617481 - 11617438
Alignment:
160 atctaatggctattatgtactcctctcaccctctcatttaaaaa 203  Q
    ||||||||| | |||| |||||||||||||||||||||||||||    
11617481 atctaatggttgttatttactcctctcaccctctcatttaaaaa 11617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 24515929 - 24515964
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||| ||||||||||||||    
24515929 tcctctcaccctctcatttaagaagtcctctcattt 24515964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 40934812 - 40934883
Alignment:
159 aatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||| |||||| ||| | || ||||||||||||||||||||||| ||||||| |||| ||||| ||| ||||    
40934812 aatccaatggccattgtttaatcctctcaccctctcatttaaaatgtcctcttatttgaaatgccctatata 40934883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 55058560 - 55058525
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||||| ||||||||||||    
55058560 tcctctcaccctctcatttaaaaggtcctctcattt 55058525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 36244153 - 36244203
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||| ||||    
36244153 tcctctcaccctctcatttaaaaaatcatctcatttgaaatgccctatata 36244203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 104492 - 104540
Alignment:
150 cattaatttaatctaatggctattatgtactcctctcaccctctcattt 198  Q
    ||||||||| ||||||  ||| |||| ||||||||||||||||||||||    
104492 cattaatttgatctaagagctgttatttactcctctcaccctctcattt 104540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 48058320 - 48058288
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctca 212  Q
    ||||||||||||||||||| |||||||||||||    
48058320 tcctctcaccctctcattttaaaagtcctctca 48058288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 19068510 - 19068460
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
19068510 tcctctcaccctctcatttaaaaagtcctctcatttgaaatgccctctata 19068460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 43448522 - 43448572
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
43448522 tcctctcaccctctcatttaaaaggtcctctcatttgaaatgtcctatata 43448572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 29064801 - 29064744
Alignment:
163 taatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaat 220  Q
    |||| ||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||    
29064801 taatagctgttatttactcctctcaccctctcatttaaaaactcctctcatttgaaat 29064744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 13784144 - 13784068
Alignment:
123 acactttaaaacaaaatt-aattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcattt 198  Q
    ||||||||||||  |||| ||| ||| ||||  ||||||||||||||  ||||||||||||||||| ||||||||||    
13784144 acactttaaaactgaatttaatcctacccatagatttaatctaatggtcattatgtactcctctcatcctctcattt 13784068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 14253994 - 14253959
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||||||||| ||||||||    
14253994 tcctctcaccctctcatttaaaaagtcatctcattt 14253959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 14255616 - 14255651
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||||||||||||||||||| ||||||||    
14255616 tcctctcaccctctcatttaaaaagtcatctcattt 14255651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 19069254 - 19069304
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| ||| ||||    
19069254 tcctctcaccctctcatttaaaaagtcatctcttttgaaatgccctatata 19069304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 45432940 - 45433016
Alignment:
154 aatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||| ||||||| |||||||   | |||||||| ||||||||||||||| |||||||| || ||||| ||| ||||    
45432940 aatttgatctaatagctattaatgagtcctctcatcctctcatttaaaaaatcctctcacttgaaatgccctatata 45433016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 278 - 197
Alignment:
149 ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||| ||||||||||| || | ||||  |||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||    
278 ccatttatttaatctaacggttcttattaactcctctcatcctctcatttaaaaagtcctctcatttgaaatgccctatata 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 30784921 - 30784878
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtc 223  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
30784921 tcctctcaccctctcatttaaaaagtcctctcatttgaaatgtc 30784878  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 6257770 - 6257813
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtc 223  Q
    |||||||||| ||||||||||||||||||||||||| |||||||    
6257770 tcctctcaccttctcatttaaaaagtcctctcatttgaaatgtc 6257813  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 25616893 - 25616854
Alignment:
182 ctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    |||||||||||||||||||||||||||||||||| |||||    
25616893 ctctcaccctctcatttaaaaagtcctctcatttgaaatg 25616854  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 30266366 - 30266316
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    |||||||||||||||||||||||||| ||||||||| ||||| ||| ||||    
30266366 tcctctcaccctctcatttaaaaagtgctctcatttgaaatgccctatata 30266316  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 14236016 - 14235961
Alignment:
160 atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||    
14236016 atctaatggctgttatttactcctctcaccctctcatttaaaaagtgctcttattt 14235961  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 14237366 - 14237427
Alignment:
160 atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||| |||| |||| |||||    
14237366 atctaatggatgttatttactcctctcaccctctcatttaaaaagtgctcttatttgaaatg 14237427  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 15601458 - 15601503
Alignment:
167 ggctattatgtactcctctcaccctctcatttaaaaagtcctctca 212  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||    
15601458 ggctattatttactcctctcatcctctcatttaaaaagccctctca 15601503  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 49359684 - 49359643
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
49359684 tcctctcaccctctcatttaaaaactcctctcatttgaaatg 49359643  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 36391358 - 36391398
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaat 220  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
36391358 tcctctcaccctctcatttataaagtcctctcatttgaaat 36391398  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 44770385 - 44770420
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcattt 215  Q
    |||||||||||||||||||| |||||||||||||||    
44770385 tcctctcaccctctcatttagaaagtcctctcattt 44770420  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 32994026 - 32994067
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
32994026 tcctctcaccctctcatttaaaaaaccctctcatttgaaatg 32994067  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 49361980 - 49362021
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatg 221  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
49361980 tcctctcaccttctcatttaaaaactcctctcatttgaaatg 49362021  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 2071475 - 2071507
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctca 212  Q
    ||||||||||||||||||| |||||||||||||    
2071475 tcctctcaccctctcattttaaaagtcctctca 2071507  T

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Target: scaffold0159 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 28199 - 28149
Alignment:
180 tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata 230  Q
    ||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
28199 tcctctcaccctctcatttaaaaagtcctcttatttgaaatgccctatata 28149  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 15071 - 15034
Alignment:
167 ggctattatgtactcctctcaccctctcatttaaaaag 204  Q
    ||||||||| ||||||||||| ||||||||||||||||    
15071 ggctattatttactcctctcatcctctcatttaaaaag 15034  T

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