View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10127_low_12 (Length: 242)
Name: NF10127_low_12
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10127_low_12 |
 |  |
|
[»] scaffold0285 (1 HSPs) |
 |  |  |
|
[»] scaffold1370 (1 HSPs) |
 |  |  |
|
[»] scaffold0159 (1 HSPs) |
 |  |  |
|
[»] scaffold0069 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 50999431 - 50999613
Alignment:
Q |
20 |
ctgggtggggttggatatgtaatgcttctcacaaatattgaacagaaagagaattcgaggaaacagacatgatgggtggcgagagaaatttgatggggcc |
119 |
Q |
|
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
T |
50999431 |
ctgggtggggttggatctgtaatgcttctcacaaatattgaacagaaagagaattcgaggaaacagacatgatgggtggcgagagaaatttgatggggtc |
50999530 |
T |
 |
Q |
120 |
agcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaa |
202 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
50999531 |
agcacactttaaaacagaattaattctaaccattaatttaatctaatagctattatgtactcctctcaccctctcatttaaaa |
50999613 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 50998939 - 50998853
Alignment:
Q |
118 |
ccagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaag |
204 |
Q |
|
|
|||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||||||| |
|
|
T |
50998939 |
ccagcacactttaaaacagaattaatcataaccattaatttgatctaatggttattacgtgctcctatcaccctctcatttaaaaag |
50998853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 49574727 - 49574789
Alignment:
Q |
160 |
atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgt |
222 |
Q |
|
|
||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
49574727 |
atctaatggttgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgt |
49574789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 43428521 - 43428471
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
T |
43428521 |
tcctctcaccctctcatttaaaaagtcctctcatttaaaatgccctttata |
43428471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 19638173 - 19638098
Alignment:
Q |
155 |
atttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||| ||||||||| | | || || |||||||||||||||||||||||| ||||||||||| ||||| ||| |||| |
|
|
T |
19638173 |
atttcatctaatggttgtgatttaatcctctcaccctctcatttaaaaattcctctcatttgaaatgccctatata |
19638098 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 51208811 - 51208860
Alignment:
Q |
181 |
cctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||| |||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
T |
51208811 |
cctcccaccatctcatttaaaaagtcctcttatttaaaatgtcctctata |
51208860 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 5941386 - 5941426
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaat |
220 |
Q |
|
|
||||||||||||||| |||||||||||||||||||| |||| |
|
|
T |
5941386 |
tcctctcaccctctcgtttaaaaagtcctctcatttaaaat |
5941426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 17736624 - 17736576
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||| |||||||||| |||| ||||||||||| |||||||||||||| |
|
|
T |
17736624 |
ctctcatcctctcattttaaaactcctctcatttgaaatgtcctctata |
17736576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 21436601 - 21436553
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||| ||||||||||| ||||| ||| |||| |
|
|
T |
21436601 |
ctctcaccctctcatttaaaaactcctctcatttgaaatgccctatata |
21436553 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 56573811 - 56573771
Alignment:
Q |
147 |
aaccattaatttaatctaatggctattatgtactcctctca |
187 |
Q |
|
|
|||||||||||||||||||||||||||||| | |||||||| |
|
|
T |
56573811 |
aaccattaatttaatctaatggctattatgaattcctctca |
56573771 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 33581140 - 33581175
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||| |
|
|
T |
33581140 |
tcctctcaccctctcatttaaaaactcctctcattt |
33581175 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 31136072 - 31136024
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||| |||||||||| |||| ||||||||||| ||||||||| |||| |
|
|
T |
31136072 |
ctctcatcctctcattttaaaactcctctcatttgaaatgtcctatata |
31136024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 56574299 - 56574331
Alignment:
Q |
157 |
ttaatctaatggctattatgtactcctctcacc |
189 |
Q |
|
|
|||||||||||||||||||||| |||||||||| |
|
|
T |
56574299 |
ttaatctaatggctattatgtattcctctcacc |
56574331 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 23546749 - 23546959
Alignment:
Q |
20 |
ctgggtggggttggatatgtaatgcttctcacaaatattgaacagaaagagaattcgaggaaacagacatgatgggtggcgagagaaatttgatggggcc |
119 |
Q |
|
|
|||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
23546749 |
ctgggtggggttcgatctgtaatgcttctcacaaatattgctcagaaagagaattcaaggaaacagacatgatgggtggcgagagaaatttgatggggca |
23546848 |
T |
 |
Q |
120 |
agcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaa |
219 |
Q |
|
|
|||||||||||||||| ||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
T |
23546849 |
agcacactttaaaacagaattaatcctaaccattattttgatttaatggctattatgtactcctctcaccctctcatttaaaaagctctctcatttgaaa |
23546948 |
T |
 |
Q |
220 |
tgtcctctata |
230 |
Q |
|
|
|| ||| |||| |
|
|
T |
23546949 |
tgccctatata |
23546959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 23546257 - 23546140
Alignment:
Q |
113 |
tggggccagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
T |
23546257 |
tggggccagcacactttaaaacagaattaatcctaaccattattttgatctaatggctattatatactcctctcaccctctcatttaaaatgccctctca |
23546158 |
T |
 |
Q |
213 |
tttcaaatgtcctctata |
230 |
Q |
|
|
||| ||||| ||| |||| |
|
|
T |
23546157 |
tttgaaatgccctatata |
23546140 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 36697753 - 36697680
Alignment:
Q |
154 |
aatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctct |
227 |
Q |
|
|
||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
T |
36697753 |
aatttgatctaagggctgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgtcctct |
36697680 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 16723759 - 16723678
Alignment:
Q |
149 |
ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||| |||||| |||| |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||| |||| |
|
|
T |
16723759 |
ccattaatttgatctaagggctgttatttactcctctcaccctctcattttaaaagtcctctcatttgaaatgccctatata |
16723678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 43307416 - 43307496
Alignment:
Q |
149 |
ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctat |
229 |
Q |
|
|
|||||||||| |||||| |||| |||| |||||||||||||||||||||| |||| || |||||||| ||||||| ||||| |
|
|
T |
43307416 |
ccattaatttgatctaagggctgttatttactcctctcaccctctcattttaaaaatcatctcatttaaaatgtcttctat |
43307496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 37551075 - 37550998
Alignment:
Q |
149 |
ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctc |
226 |
Q |
|
|
||||| |||||||||||||| | |||| |||||||||| |||||||||||||||| |||||||||| ||||| |||| |
|
|
T |
37551075 |
ccatttatttaatctaatggttcttattaactcctctcatcctctcatttaaaaagccctctcatttgaaatgccctc |
37550998 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 43306792 - 43306683
Alignment:
Q |
119 |
cagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaa |
218 |
Q |
|
|
||||||||||||||| || ||||| | |||||||||| |||||| | || |||| ||||||| ||||||||||||| |||| ||||||||||| || |
|
|
T |
43306792 |
cagcacactttaaaattaatttaatctgatccattaatttgatctaaggactgttatttactccttccaccctctcattttaaaaatcctctcatttgaa |
43306693 |
T |
 |
Q |
219 |
atgtcctcta |
228 |
Q |
|
|
||| |||||| |
|
|
T |
43306692 |
atgccctcta |
43306683 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 9044231 - 9044181
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
T |
9044231 |
tcctctcaccctctcatttaaaaagtcatctcatttaaaatgccctatata |
9044181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 37811214 - 37811170
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcc |
224 |
Q |
|
|
|||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
T |
37811214 |
tcctctcatcctctcatttaaaaagtcatctcatttgaaatgtcc |
37811170 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 31287053 - 31287092
Alignment:
Q |
159 |
aatctaatggctattatgtactcctctcaccctctcattt |
198 |
Q |
|
|
||||||||||||||||| || ||||||||||||||||||| |
|
|
T |
31287053 |
aatctaatggctattatttagtcctctcaccctctcattt |
31287092 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 44495131 - 44495166
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||| |
|
|
T |
44495131 |
tcctctcaccctctcatttaaaaactcctctcattt |
44495166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 24287617 - 24287667
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||||| |||||||||| ||||| ||| |||| |
|
|
T |
24287617 |
tcctctcaccctctcatttaaaaaaccctctcatttgaaatgccctatata |
24287667 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 28540372 - 28540420
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||| |||||||||| |||||||||||||||| ||||| ||| |||| |
|
|
T |
28540372 |
ctctcatcctctcattttaaaagtcctctcatttgaaatgccctatata |
28540420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 19284285 - 19284363
Alignment:
Q |
137 |
aattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
|
|
T |
19284285 |
aattaatcctaaccattaatttgatctaatggccattatgtactcctctcaccctctcatttaaataaccctctcattt |
19284363 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 20378894 - 20378963
Alignment:
Q |
119 |
cagcacactttaaaacaaaattaattc-taaccattaatttaatctaatggctattatgtactcctctca |
187 |
Q |
|
|
|||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
|
|
T |
20378894 |
cagcacactttaaaactaaattaaatcataaccattaatttaatctaatggtcattatgtactcctctca |
20378963 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 19825014 - 19825083
Alignment:
Q |
119 |
cagcacactttaaaacaaaattaattc-taaccattaatttaatctaatggctattatgtactcctctca |
187 |
Q |
|
|
|||||||||||||||| ||||||| || |||||||||||||||||||||| | ||||| ||||||||||| |
|
|
T |
19825014 |
cagcacactttaaaactaaattaaatcataaccattaatttaatctaatgaccattatctactcctctca |
19825083 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 15997538 - 15997588
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
T |
15997538 |
tcctctcaccctctcatttaaaaactcctctcatttgaaatgccctctata |
15997588 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 4279131 - 4279096
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |
|
|
T |
4279131 |
tcctctcaccctctcatttaaaaagtcctctcattt |
4279096 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 4284352 - 4284387
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |
|
|
T |
4284352 |
tcctctcaccctctcatttaaaaagtcctctcattt |
4284387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 20508681 - 20508606
Alignment:
Q |
155 |
atttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||| ||||||||| | | || || ||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
T |
20508681 |
atttcatctaatggttgtgatttaatcctctcaccctctcatttaaaaagtcatctcatttgaaatgccctatata |
20508606 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 20756414 - 20756458
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctc |
226 |
Q |
|
|
|||||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
T |
20756414 |
ctctcaccctctcatttaaaaactcctctcatttgaaatgccctc |
20756458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 32261204 - 32261244
Alignment:
Q |
181 |
cctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
|||||||||||||||||||||||||| |||||||| ||||| |
|
|
T |
32261204 |
cctctcaccctctcatttaaaaagtcatctcatttgaaatg |
32261244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 12796033 - 12796083
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||| ||||||||||||||||| ||| ||||| ||||||| |||||| |
|
|
T |
12796033 |
tcctctcatcctctcatttaaaaagttctcccatttaaaatgtcatctata |
12796083 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 35424372 - 35424265
Alignment:
Q |
119 |
cagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaa |
218 |
Q |
|
|
||||||||||||||| || ||||| | |||||||||| |||||| |||| |||| |||||||||||||||||||||| |||||||||||||||| || |
|
|
T |
35424372 |
cagcacactttaaaattaatttaatctgatccattaatttgatctaagggctgttatttactcctctcaccctctcattttaaaagtcctctcatttgaa |
35424273 |
T |
 |
Q |
219 |
atgtcctc |
226 |
Q |
|
|
||| |||| |
|
|
T |
35424272 |
atgccctc |
35424265 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 13772871 - 13772945
Alignment:
Q |
114 |
ggggccagcacactttaaaacaaaatt-aattctaaccattaatttaatctaatggctattatgtactcctctca |
187 |
Q |
|
|
|||| |||||||||||||||| |||| ||| |||||||||||||| |||| ||||||||||||||||||||||| |
|
|
T |
13772871 |
gggggcagcacactttaaaactgaatttaatcctaaccattaatttgatcttatggctattatgtactcctctca |
13772945 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 14098566 - 14098491
Alignment:
Q |
155 |
atttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||| ||||||||| | | || || |||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
T |
14098566 |
atttcatctaatggttgtgatttaatcctctcaccctctcatttaaaaagtcctctcatttaaaatgccctatata |
14098491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 10470131 - 10470073
Alignment:
Q |
154 |
aatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||| |
|
|
T |
10470131 |
aatttaatctaatggctattaatgagtcctctcatcctctcatttaaaaaatcctctca |
10470073 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 12696528 - 12696478
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
T |
12696528 |
tcctctcaccctctcatttaaaaagtcatctcatttgaaatggcctatata |
12696478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 11448584 - 11448619
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||||||||||||||||| |||||||||||||| |
|
|
T |
11448584 |
tcctctcaccctctcatttaagaagtcctctcattt |
11448619 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 13772316 - 13772277
Alignment:
Q |
148 |
accattaatttaatctaatggctattatgtactcctctca |
187 |
Q |
|
|
||||||||||| |||||||||||||||||||| ||||||| |
|
|
T |
13772316 |
accattaatttgatctaatggctattatgtacccctctca |
13772277 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 33574002 - 33574061
Alignment:
Q |
153 |
taatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
||||||||||||| || ||||| | ||||||||||||||||||| ||||||||||||| |
|
|
T |
33574002 |
taatttaatctaagggtcattatttcatcctctcaccctctcattttaaaagtcctctca |
33574061 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30576042 - 30576074
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
|||||||||||||||||||||||| |||||||| |
|
|
T |
30576042 |
tcctctcaccctctcatttaaaaactcctctca |
30576074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 17511 - 17592
Alignment:
Q |
149 |
ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||| |||||||||||||| | |||| |||||||||| ||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
T |
17511 |
ccatttatttaatctaatggttcttattaactcctctcatcctctcatttaaaaaatcctctcatttgaaatgccctctata |
17592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 29749318 - 29749379
Alignment:
Q |
160 |
atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
29749318 |
atctaatagctgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatg |
29749379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 103856 - 103754
Alignment:
Q |
119 |
cagcacactttaaaacaaaattaattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaa |
218 |
Q |
|
|
||||||||||||||| || ||||| | |||||||||| |||||| | || |||| |||||||| |||||||| |||| |||||||||||||||| || |
|
|
T |
103856 |
cagcacactttaaaattaatttaatctgatccattaatttgatctaaggactgttatttactcctcccaccctcttattttaaaagtcctctcatttgaa |
103757 |
T |
 |
Q |
219 |
atg |
221 |
Q |
|
|
||| |
|
|
T |
103756 |
atg |
103754 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 54517006 - 54516957
Alignment:
Q |
181 |
cctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
T |
54517006 |
cctctcaccctctcatttaaaaactcctctcatttgaaatgccctctata |
54516957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 47393938 - 47393895
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtc |
223 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
T |
47393938 |
tcctctcaccctctcatttataaagtcctctcatttgaaatgtc |
47393895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 31595183 - 31595130
Alignment:
Q |
177 |
tactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| || | ||| |||||||| |
|
|
T |
31595183 |
tactcctctcaccctctcatttaaaaactcctctcacttgatatgccctctata |
31595130 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 31595860 - 31595913
Alignment:
Q |
177 |
tactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| || | ||| |||||||| |
|
|
T |
31595860 |
tactcctctcaccctctcatttaaaaactcctctcacttgatatgccctctata |
31595913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 54524693 - 54524741
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||| |||||||||| |||||||||||||||| ||||||||| |||| |
|
|
T |
54524693 |
ctctcatcctctcattttaaaagtcctctcatttgaaatgtcctatata |
54524741 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 11617481 - 11617438
Alignment:
Q |
160 |
atctaatggctattatgtactcctctcaccctctcatttaaaaa |
203 |
Q |
|
|
||||||||| | |||| ||||||||||||||||||||||||||| |
|
|
T |
11617481 |
atctaatggttgttatttactcctctcaccctctcatttaaaaa |
11617438 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 24515929 - 24515964
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||||||||||||||||| |||||||||||||| |
|
|
T |
24515929 |
tcctctcaccctctcatttaagaagtcctctcattt |
24515964 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 40934812 - 40934883
Alignment:
Q |
159 |
aatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||| |||||| ||| | || ||||||||||||||||||||||| ||||||| |||| ||||| ||| |||| |
|
|
T |
40934812 |
aatccaatggccattgtttaatcctctcaccctctcatttaaaatgtcctcttatttgaaatgccctatata |
40934883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 55058560 - 55058525
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||||||||||||||||||| |||||||||||| |
|
|
T |
55058560 |
tcctctcaccctctcatttaaaaggtcctctcattt |
55058525 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 36244153 - 36244203
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||||| || |||||||| ||||| ||| |||| |
|
|
T |
36244153 |
tcctctcaccctctcatttaaaaaatcatctcatttgaaatgccctatata |
36244203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 104492 - 104540
Alignment:
Q |
150 |
cattaatttaatctaatggctattatgtactcctctcaccctctcattt |
198 |
Q |
|
|
||||||||| |||||| ||| |||| |||||||||||||||||||||| |
|
|
T |
104492 |
cattaatttgatctaagagctgttatttactcctctcaccctctcattt |
104540 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 48058320 - 48058288
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
||||||||||||||||||| ||||||||||||| |
|
|
T |
48058320 |
tcctctcaccctctcattttaaaagtcctctca |
48058288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 19068510 - 19068460
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
T |
19068510 |
tcctctcaccctctcatttaaaaagtcctctcatttgaaatgccctctata |
19068460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 43448522 - 43448572
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
|
|
T |
43448522 |
tcctctcaccctctcatttaaaaggtcctctcatttgaaatgtcctatata |
43448572 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 29064801 - 29064744
Alignment:
Q |
163 |
taatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaat |
220 |
Q |
|
|
|||| ||| |||| ||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
T |
29064801 |
taatagctgttatttactcctctcaccctctcatttaaaaactcctctcatttgaaat |
29064744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 13784144 - 13784068
Alignment:
Q |
123 |
acactttaaaacaaaatt-aattctaaccattaatttaatctaatggctattatgtactcctctcaccctctcattt |
198 |
Q |
|
|
|||||||||||| |||| ||| ||| |||| |||||||||||||| ||||||||||||||||| |||||||||| |
|
|
T |
13784144 |
acactttaaaactgaatttaatcctacccatagatttaatctaatggtcattatgtactcctctcatcctctcattt |
13784068 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 14253994 - 14253959
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| |
|
|
T |
14253994 |
tcctctcaccctctcatttaaaaagtcatctcattt |
14253959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 14255616 - 14255651
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| |
|
|
T |
14255616 |
tcctctcaccctctcatttaaaaagtcatctcattt |
14255651 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 19069254 - 19069304
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||||||| |||| ||| ||||| ||| |||| |
|
|
T |
19069254 |
tcctctcaccctctcatttaaaaagtcatctcttttgaaatgccctatata |
19069304 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 45432940 - 45433016
Alignment:
Q |
154 |
aatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||| ||||||| ||||||| | |||||||| ||||||||||||||| |||||||| || ||||| ||| |||| |
|
|
T |
45432940 |
aatttgatctaatagctattaatgagtcctctcatcctctcatttaaaaaatcctctcacttgaaatgccctatata |
45433016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1370 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1370
Description:
Target: scaffold1370; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 278 - 197
Alignment:
Q |
149 |
ccattaatttaatctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||| ||||||||||| || | |||| |||||||||| ||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
T |
278 |
ccatttatttaatctaacggttcttattaactcctctcatcctctcatttaaaaagtcctctcatttgaaatgccctatata |
197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 30784921 - 30784878
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtc |
223 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
30784921 |
tcctctcaccctctcatttaaaaagtcctctcatttgaaatgtc |
30784878 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 6257770 - 6257813
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtc |
223 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
T |
6257770 |
tcctctcaccttctcatttaaaaagtcctctcatttgaaatgtc |
6257813 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 25616893 - 25616854
Alignment:
Q |
182 |
ctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
25616893 |
ctctcaccctctcatttaaaaagtcctctcatttgaaatg |
25616854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 30266366 - 30266316
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||| ||||| ||| |||| |
|
|
T |
30266366 |
tcctctcaccctctcatttaaaaagtgctctcatttgaaatgccctatata |
30266316 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 14236016 - 14235961
Alignment:
Q |
160 |
atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
T |
14236016 |
atctaatggctgttatttactcctctcaccctctcatttaaaaagtgctcttattt |
14235961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 14237366 - 14237427
Alignment:
Q |
160 |
atctaatggctattatgtactcctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
||||||||| | |||| ||||||||||||||||||||||||||||| |||| |||| ||||| |
|
|
T |
14237366 |
atctaatggatgttatttactcctctcaccctctcatttaaaaagtgctcttatttgaaatg |
14237427 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 15601458 - 15601503
Alignment:
Q |
167 |
ggctattatgtactcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
||||||||| ||||||||||| |||||||||||||||| ||||||| |
|
|
T |
15601458 |
ggctattatttactcctctcatcctctcatttaaaaagccctctca |
15601503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 49359684 - 49359643
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||| ||||| |
|
|
T |
49359684 |
tcctctcaccctctcatttaaaaactcctctcatttgaaatg |
49359643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 36391358 - 36391398
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaat |
220 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||| |||| |
|
|
T |
36391358 |
tcctctcaccctctcatttataaagtcctctcatttgaaat |
36391398 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 44770385 - 44770420
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcattt |
215 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||| |
|
|
T |
44770385 |
tcctctcaccctctcatttagaaagtcctctcattt |
44770420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 32994026 - 32994067
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
|||||||||||||||||||||||| |||||||||| ||||| |
|
|
T |
32994026 |
tcctctcaccctctcatttaaaaaaccctctcatttgaaatg |
32994067 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 49361980 - 49362021
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatg |
221 |
Q |
|
|
|||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
T |
49361980 |
tcctctcaccttctcatttaaaaactcctctcatttgaaatg |
49362021 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 2071475 - 2071507
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctca |
212 |
Q |
|
|
||||||||||||||||||| ||||||||||||| |
|
|
T |
2071475 |
tcctctcaccctctcattttaaaagtcctctca |
2071507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 28199 - 28149
Alignment:
Q |
180 |
tcctctcaccctctcatttaaaaagtcctctcatttcaaatgtcctctata |
230 |
Q |
|
|
||||||||||||||||||||||||||||||| |||| ||||| ||| |||| |
|
|
T |
28199 |
tcctctcaccctctcatttaaaaagtcctcttatttgaaatgccctatata |
28149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 15071 - 15034
Alignment:
Q |
167 |
ggctattatgtactcctctcaccctctcatttaaaaag |
204 |
Q |
|
|
||||||||| ||||||||||| |||||||||||||||| |
|
|
T |
15071 |
ggctattatttactcctctcatcctctcatttaaaaag |
15034 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University