View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10127_low_13 (Length: 239)
Name: NF10127_low_13
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10127_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 365404 - 365626
Alignment:
Q |
1 |
aaaattgatggagtagaagaaatacttcaaaatcaaaatccgatacaaggagaactaaccactttgcaatgaaaaggtcattgcataacaattcctaata |
100 |
Q |
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T |
365404 |
aaaattgatggagtagaagaaatacttcaaaatcaaaatccgatacaaggagaactaaccactttgcaatgaaaaggtcattgcataacaattcctaata |
365503 |
T |
 |
Q |
101 |
atattttcctacatttgttcatattaagttaaatacnnnnnnnngacaaacttactactcaaatacacttattttgttctaaagaatgcaattatggttt |
200 |
Q |
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T |
365504 |
atattttcctacatttgttcatattaagttaaatactttttttttacaaacttactactcaaatacacttattttgttctaaagaatgcaattatggttt |
365603 |
T |
 |
Q |
201 |
acaaggaaaaaattaattggatt |
223 |
Q |
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T |
365604 |
acaaggaaaaaattaattggatt |
365626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 4026515 - 4026469
Alignment:
Q |
145 |
gacaaacttactactcaaatacacttattttgttctaaagaatgcaa |
191 |
Q |
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T |
4026515 |
gacaaacttactactcaaatacacttgttttgttctaaagaatgcaa |
4026469 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 4026601 - 4026540
Alignment:
Q |
41 |
cgatacaaggagaactaaccactttgcaatgaaaaggtcattgcataacaattcctaataat |
102 |
Q |
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T |
4026601 |
cgatataagaagaactaaccactttgctgcgaaaaggacattgcataacaatttctattaat |
4026540 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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