View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10127_low_16 (Length: 208)

Name: NF10127_low_16
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10127_low_16
NF10127_low_16
[»] chr5 (16 HSPs)
chr5 (1-162)||(30750462-30750623)
chr5 (1-193)||(30061188-30061380)
chr5 (1-193)||(30337623-30337815)
chr5 (1-162)||(30676417-30676578)
chr5 (1-162)||(30436629-30436790)
chr5 (1-162)||(30712557-30712718)
chr5 (1-162)||(30484217-30484378)
chr5 (1-193)||(29854127-29854319)
chr5 (2-193)||(29872991-29873182)
chr5 (1-161)||(30400890-30401050)
chr5 (1-160)||(30207338-30207497)
chr5 (1-162)||(30476191-30476352)
chr5 (1-162)||(30241510-30241671)
chr5 (1-162)||(30520754-30520915)
chr5 (1-162)||(30561094-30561255)
chr5 (84-162)||(30330338-30330416)
[»] chr7 (1 HSPs)
chr7 (1-162)||(26708148-26708309)
[»] chr4 (2 HSPs)
chr4 (1-162)||(20295711-20295872)
chr4 (1-162)||(52352775-52352936)
[»] chr3 (1 HSPs)
chr3 (1-162)||(25293076-25293237)
[»] chr1 (2 HSPs)
chr1 (1-162)||(7580848-7581009)
chr1 (102-162)||(7100338-7100398)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 30750462 - 30750623
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750462 catcatccaaaaccaacaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 30750561  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30750562 agattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 30750623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 30061188 - 30061380
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  30061188 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctctctttccattacagcataatcaaagtcaggacacttctgtaatgtgat 30061287  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaannnnnnnnncaaaattgccactcaccctaac 193  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  30061288 agattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaac 30061380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 30337815 - 30337623
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  30337815 catcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttccttccattacagcataatcaaagtcaggacacttctctaatgtgat 30337716  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaannnnnnnnncaaaattgccactcaccctaac 193  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  30337715 agattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaac 30337623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 30676578 - 30676417
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30676578 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttccttccattacagcatactcaaagtcaggacacttctctaatgtgat 30676479  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  30676478 agattcgaaaatagaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 30676417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 30436629 - 30436790
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |  | |||||||||| ||||||||||  ||||||    
T  30436629 catcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaaatcaaagtcagcacacttctctcttgtgat 30436728  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  30436729 agattctataatagaacacaaaatccttttgaccgagaaagtctcagaaacacaaacccaaa 30436790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 30712718 - 30712557
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||  ||| |  |||||||||||||||||||||||||||| ||    
T  30712718 catcatccaaaatcagcaaatatattttcccttgcaacaatccttgcagctttctttccaagacatctaactcaaagtcaggacacttctctaatgtaat 30712619  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  30712618 agattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 30712557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 30484217 - 30484378
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||  ||| |  ||||||||||| |||||||||||||||| ||    
T  30484217 catcatccaaaatcagcaaatatattttccgttgcaacaatccttgcacctttctttccaagacatctaactcaaagtcatgacacttctctaatgtaat 30484316  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  30484317 agattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 30484378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 29854127 - 29854319
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||| |||| |  | |||||||||| | ||||||||  ||||||    
T  29854127 catcatccaaaaccagcaaatatattttaccttgcaacaattcttgcacccttctttccaatacatctaaatcaaagtcagcagacttctctcttgtgat 29854226  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaannnnnnnnncaaaattgccactcaccctaac 193  Q
    |||||||| ||||||||||||||| ||||| || | |||||| |||||||| ||||||||||         ||||||||||||||||||||||    
T  29854227 agattctacaatagaacacaaaattctcttgactgagaaagtttcagaaacgcaaacccaaatttttttatcaaaattgccactcaccctaac 29854319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 29872991 - 29873182
Alignment:
Q  2 atcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgata 101  Q
    |||||||||||| ||||||||| |||| ||||||| || | ||||||||||||||||||||||| |  | || ||||||| ||||||||||  |||||||    
T  29872991 atcatccaaaacgagcaaatattttttaccttgcagcacttcttgcacctttctttccattacatctaattcgaagtcagcacacttctctcttgtgata 29873090  T
Q  102 gattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaannnnnnnnncaaaattgccactcaccctaac 193  Q
    ||||||||||| |||||  |||||||||| || | ||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  29873091 gattctataatggaacaacaaatcctcttgacagagaaagtctcagaaacacaaacccaaatatttttgtcaaaattgccactcaccctaac 29873182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30400890 - 30401050
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| || |||||||||||||| |||||||||||||||  |||||| |  | || ||| ||  |||  |||||  ||| ||    
T  30400890 catcatccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttctttgtattacatctgaatccaaggcatcacatatctctcctgtaat 30400989  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaa 161  Q
    | |||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||    
T  30400990 atattctataatagaacacaaaatcctcttgacagagaaagtctcggaaacacaaacccaa 30401050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 30207338 - 30207497
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| |||| ||||||| |||| | |||||||||||||  |||||| |  | |  ||| |   | ||||||||  ||||||    
T  30207338 catcatccaaaatcagcaaatatattttaccttgcagcaattcctgcacctttctttgtattacatctaaattgaagccgtcatacttctctcttgtgat 30207437  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaaccca 160  Q
    |||||||||||| || |||||||||||||| |||| ||||||||| ||||||||||||||    
T  30207438 agattctataatggagcacaaaatcctcttgaccgagaaagtctcggaaacacaaaccca 30207497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 30476191 - 30476352
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||||||||||| ||||||| |||||||| | | || |  | |||||||  |||||| |  | || ||| ||  | |||| |||  ||||||    
T  30476191 catcatccaaaaccagcaaaaatcttttaccttgcaatagttctcgtgcttttctttgtattacatctaaatccaaggcatcaaacttgtcttttgtgat 30476290  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||||| |||||||||||||| || || | ||||||||| |||||||||| |||||    
T  30476291 agattctataatggaacacaaaatccttttgacagagaaagtctccgaaacacaaatccaaa 30476352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 30241671 - 30241510
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||| ||||||||| |||| ||||| |||||| | ||||||||| | |   |||||    | |||||| ||  | |||||| |  ||||||    
T  30241671 catcatccaaaactagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttcttttctgtgat 30241572  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    | ||| |||||| |||||||||||||| || || | |||| |||||||||||||||||||||    
T  30241571 aaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacacaaacccaaa 30241510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 30520915 - 30520754
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||| |||||||||||||| |||| ||||||| ||||||| | || ||  || ||| |  | || ||| ||  |||||| |||  ||  |     
T  30520915 catcatccaaaacaagcaaatatcttttaccttccaacaattcttgcacttgtcgttgtataacatctaaatctaaggcatcacacttttctcttgaaaa 30520816  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||||||| |||||||||  | || || | ||||| ||||||||||||||||||||    
T  30520815 agattctataatagtacacaaaattttgttaacagagaaagcctcagaaacacaaacccaaa 30520754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 30561255 - 30561094
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||| |||||||||||||| |||| ||||||| ||||||| | || ||  || ||| |  | || ||| ||  |||||| |||  ||  |     
T  30561255 catcatccaaaacaagcaaatatcttttaccttccaacaattcttgcacttgtcgttgtataacatctaaatctaaggcatcacacttttctcttgaaaa 30561156  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||||||| |||||||||  | || || | ||||| ||||||||||||||||||||    
T  30561155 agattctataatagtacacaaaattttgttaacagagaaagcctcagaaacacaaacccaaa 30561094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 30330416 - 30330338
Alignment:
Q  84 cacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||  | |||||| ||||||||||||||||| |||||| || |  | |||||||||| | |||||||||||||    
T  30330416 cacttctctcttatgataggttctataatagaacacacaatcctattgagagagaaagtctcatatacacaaacccaaa 30330338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 26708148 - 26708309
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  26708148 catcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaactcaaagtcaggacacttctctaatgtgat 26708247  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||    
T  26708248 agattctataatagaacacaaaatcctcttgactgagaaagtctcagaaacacaaacccaaa 26708309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 20295872 - 20295711
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |||  |  | |||||||||||||||||||||||||||||    
T  20295872 catcatctaaaatcaacaaatatattttcccttgcaacaatccttgcacctttctttccaatacgtctaagtcaaagtcaggacacttctctaatgtgat 20295773  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    ||||||||||||||||| |||||||||||  |  | ||||||||||||||||||||||||||    
T  20295772 agattctataatagaacgcaaaatcctctcgaaggagaaagtctcagaaacacaaacccaaa 20295711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 52352775 - 52352936
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||| |  ||||||  || ||| |  | || ||| ||  |||||| |||  ||| ||    
T  52352775 catcatccaaaaccaacaaatatcttttaccttgcaacaattcttgcgctcttctttgtatcacatctaaatctaagccatcacacttttctcttgtaat 52352874  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||||| |||||||||||||| || || | ||||  ||||||||||||||||||||    
T  52352875 agattctataatggaacacaaaatcctattgacagagaaatcctcagaaacacaaacccaaa 52352936  T

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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 25293237 - 25293076
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagcatactcaaagtcaggacacttctctaatgtgat 100  Q
    |||| |||||||  ||||||||| |||| |||||||| | | ||| |||||||||||  |||||| |  | |||||| ||  ||||||||||   |||||    
T  25293237 catcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttctttgtattacatctaaatcaaaggcatcacacttctctctagtgat 25293138  T
Q  101 agattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  25293137 agattctataatggaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 25293076  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 7581009 - 7580848
Alignment:
Q  1 catcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccattacagc-atactcaaagtcaggacacttctctaatgtga 99  Q
    |||| |||||||||||||||  |||||| |||||||||| | |||||||||||||||  |||||| | | || ||  | ||  |||||||| |  ||| |    
T  7581009 catcgtccaaaaccagcaaacgtctttttccttgcaacatttcttgcacctttctttgtattacatctaaacccattg-catcacacttctgttttgtca 7580911  T
Q  100 tagattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    | ||||||||||| ||||||||||||| ||| |||| |||   ||| ||||||||||||||||    
T  7580910 tggattctataatggaacacaaaatccccttgaccgagaatacctctgaaacacaaacccaaa 7580848  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 7100338 - 7100398
Alignment:
Q  102 gattctataatagaacacaaaatcctctttaccgtgaaagtctcagaaacacaaacccaaa 162  Q
    ||||||||||| ||||||||||||| ||| || | ||||  ||| ||||||||||||||||    
T  7100338 gattctataatggaacacaaaatccccttgactgagaaaacctctgaaacacaaacccaaa 7100398  T

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