View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10127_low_2 (Length: 469)
Name: NF10127_low_2
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10127_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 39137683 - 39138111
Alignment:
Q |
17 |
attatctcacaagagtttgacatttaaccgggtaaaccacaataggattggttcaatgggttcattgaagggtgaagagaggtatccttttgttagagtt |
116 |
Q |
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T |
39137683 |
attatctcacaagagtttgacatttaaccgggtaaaccacaataggattggttcaatgggttcattgaagggtgaagagaggtatccttttgttagagtt |
39137782 |
T |
 |
Q |
117 |
caaagtagagagagttttggggaaagtgcttggagttggaaggggaagttagcaaagagacatgaaaatcgttttctaatcaaagaagatgccattgttg |
216 |
Q |
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T |
39137783 |
caaagtagagagagttttggggaaagtgcttggagttggaaggggaagttagcaaagagacatgaaaatcgttttctaatcaaagaagatgccattgttg |
39137882 |
T |
 |
Q |
217 |
aatctgatcctagaaccactctcatgatcaaaaacatacccaacaaatacaggtccgtcnnnnnnnnnaatgtgctttagtattattattgagtcaaata |
316 |
Q |
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T |
39137883 |
aatctgatcctagaaccactctcatgatcaaaaacatacccaacaaatacaggtccgtc--tttttttaatgtgcttttgtattattattgag------- |
39137973 |
T |
 |
Q |
317 |
ttgaactatagtaaagtaatgttattttattatgtgaaatttggtttgactctatagtcagaagttactgttgaatatgctggacaaccactgtgtacac |
416 |
Q |
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T |
39137974 |
-----ctatagtaaagtaatgttattttattatgtgaaatttggtttgactctatagtcagaagttactgttgaatatgctggacaaccactgtgtacac |
39138068 |
T |
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Q |
417 |
tgcaatgagcagctaggcgacggcgagcctctctcctcctatg |
459 |
Q |
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T |
39138069 |
tgcaatgagcagctaggcgacggcgagcctctctcctcctatg |
39138111 |
T |
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