View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10127_low_2 (Length: 469)

Name: NF10127_low_2
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10127_low_2
NF10127_low_2
[»] chr3 (1 HSPs)
chr3 (17-459)||(39137683-39138111)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 39137683 - 39138111
Alignment:
17 attatctcacaagagtttgacatttaaccgggtaaaccacaataggattggttcaatgggttcattgaagggtgaagagaggtatccttttgttagagtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39137683 attatctcacaagagtttgacatttaaccgggtaaaccacaataggattggttcaatgggttcattgaagggtgaagagaggtatccttttgttagagtt 39137782  T
117 caaagtagagagagttttggggaaagtgcttggagttggaaggggaagttagcaaagagacatgaaaatcgttttctaatcaaagaagatgccattgttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39137783 caaagtagagagagttttggggaaagtgcttggagttggaaggggaagttagcaaagagacatgaaaatcgttttctaatcaaagaagatgccattgttg 39137882  T
217 aatctgatcctagaaccactctcatgatcaaaaacatacccaacaaatacaggtccgtcnnnnnnnnnaatgtgctttagtattattattgagtcaaata 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||           
39137883 aatctgatcctagaaccactctcatgatcaaaaacatacccaacaaatacaggtccgtc--tttttttaatgtgcttttgtattattattgag------- 39137973  T
317 ttgaactatagtaaagtaatgttattttattatgtgaaatttggtttgactctatagtcagaagttactgttgaatatgctggacaaccactgtgtacac 416  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39137974 -----ctatagtaaagtaatgttattttattatgtgaaatttggtttgactctatagtcagaagttactgttgaatatgctggacaaccactgtgtacac 39138068  T
417 tgcaatgagcagctaggcgacggcgagcctctctcctcctatg 459  Q
    |||||||||||||||||||||||||||||||||||||||||||    
39138069 tgcaatgagcagctaggcgacggcgagcctctctcctcctatg 39138111  T

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