View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10127_low_4 (Length: 369)
Name: NF10127_low_4
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10127_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 443118 - 443400
Alignment:
| Q |
1 |
ctctctcaggttcaactttgtggtctaggggaacatttttgttgatgttgttgttcagattgtgtttgagttttctcaattgcattagagagtaacttgt |
100 |
Q |
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| T |
443118 |
ctctctcaggttcaactttgtggtctaggggaacattcttgttgatgttgttgttcagattgtgtttgagttttctcaattgcattagagagtaacttgt |
443217 |
T |
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| Q |
101 |
gtgtatgtcgtgctaa-tacccaatttaaggaaactataattttggtttctgagtttttaagcactagtcatatactcatatcatatataacaatcccta |
199 |
Q |
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| T |
443218 |
gtgtatgtcgtgctaagtacccaatttaaggaaactataattttggtttctgagtttttaagcactagtcatatactcatatcatatataacaatcccta |
443317 |
T |
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| Q |
200 |
aatttattattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattcagggactaa |
282 |
Q |
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| T |
443318 |
aatttatcattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattcagggactaa |
443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 443394 - 443452
Alignment:
| Q |
311 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaataca |
369 |
Q |
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| T |
443394 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaataca |
443452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 29571791 - 29571722
Alignment:
| Q |
39 |
ttgttgatgttgttgttcagattgtgtttgagttttctca---attgcattagagagtaacttgtgtgta |
105 |
Q |
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| T |
29571791 |
ttgttgaggttcttgttcagattgtgtttgagtttgctcaattattgcattagaaagtaacttgtgtgta |
29571722 |
T |
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