View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10127_low_7 (Length: 324)
Name: NF10127_low_7
Description: NF10127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10127_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 33806460 - 33806746
Alignment:
| Q |
21 |
accccattccctggtgctttatgggagatttcaactccatcttaggagcttatgagcacaaggggtattattgaccttctagaactgcaatgaagggctt |
120 |
Q |
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| T |
33806460 |
accccattccctggtgctttatgggagatttcaactccatcttaggagcttataagcacaaggggcattattgaccttccagaactgcaatgaaggactt |
33806559 |
T |
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| Q |
121 |
tcaattgtggactaatagaaataacctgatacaccttaccaccaaaggtgcaacattcgcttggcaaaatggtagaagtggaagaagatacactgaaaga |
220 |
Q |
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| T |
33806560 |
tcaattgtggactaatagaaataacctgatacaccttcccaccaaaggtgcaacattcgcttggcaaaatggtagaagtggaagaagatacactgaaaga |
33806659 |
T |
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| Q |
221 |
agactggacagattcatttgcaaacacctttggcttgaaatgtgtacctgtgtaacctgttcaaccctattaagaactaactcagac |
307 |
Q |
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| T |
33806660 |
agactggacagattcatttgcaaacacctttggcttgaaatgtgtacctgtgtaacctgttcaaccctattaagaactaacttagac |
33806746 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 11411201 - 11411153
Alignment:
| Q |
32 |
tggtgctttatgggagatttcaactccatcttaggagcttatgagcaca |
80 |
Q |
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| T |
11411201 |
tggtgttttatgggagatttcaactctattctaggagctcatgagcaca |
11411153 |
T |
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