View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10128_low_1 (Length: 654)
Name: NF10128_low_1
Description: NF10128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10128_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 327 - 646
Target Start/End: Complemental strand, 49170891 - 49170572
Alignment:
| Q |
327 |
ttttaaatttcatgagcaggcttactaatccagagatcaatttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgtt |
426 |
Q |
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| T |
49170891 |
ttttgaatttcatgagcaggcttactgatccagagatcaatttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgtt |
49170792 |
T |
|
| Q |
427 |
ttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgatt |
526 |
Q |
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| T |
49170791 |
ttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgttt |
49170692 |
T |
|
| Q |
527 |
ttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgt |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49170691 |
ttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgt |
49170592 |
T |
|
| Q |
627 |
tcctgaatgcatttcatctc |
646 |
Q |
| |
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|||||||||||||||||||| |
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| T |
49170591 |
tcctgaatgcatttcatctc |
49170572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 49171236 - 49170918
Alignment:
| Q |
18 |
gatcttcctttgctttagacccttcatctggataaggttcgtttgaaaaataagcagaatttcaacaagcttcttcatggatgtcccattttggaagatt |
117 |
Q |
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| T |
49171236 |
gatcttcccttgcttaagacccttcatctggataaggttcgtttgaaaaataagcagaatttcaacaagcttcttcatggatgtcccattttggaagatt |
49171137 |
T |
|
| Q |
118 |
tgattgctaacatttactatatagaaccagcacctcagcctgagcaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaa |
217 |
Q |
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| T |
49171136 |
tgattgctaacatttactatatagaaccagcacctcagcctgaggaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaa |
49171037 |
T |
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| Q |
218 |
gttgattagagccaaaatcaatgtatgcgatgttccatttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttaccatttaaatt |
317 |
Q |
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| T |
49171036 |
gttgattagagccaaaatcaatgtatgcgatgttccgtttagagcaattcataatgtcgaatttttatcactcactgtaagttacgttaccatttaaatt |
49170937 |
T |
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| Q |
318 |
gcaacatggttttaaattt |
336 |
Q |
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||||||||||||||||||| |
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| T |
49170936 |
gcaacatggttttaaattt |
49170918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 341 - 646
Target Start/End: Original strand, 49179249 - 49179554
Alignment:
| Q |
341 |
agcaggcttactaatccagagatcaatttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccatt |
440 |
Q |
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||||||||| || |||| |||||||||| |||||||| | |||||||||||||||| || ||||| |||||||||| |||||| | ||||||| || | |
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| T |
49179249 |
agcaggcttcctgatccggagatcaattcctataacatactctctcctatatttcgaaacctaatcctccttcaattatgcatgtataactttcatcact |
49179348 |
T |
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| Q |
441 |
gggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgattttgttccttcttta |
540 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
49179349 |
gggatcatgtaatggaagtgcttcagcattgccctaatattcaagttctcagaattaataaggtttcttatgtttgtggattgtttttgttccttcttta |
49179448 |
T |
|
| Q |
541 |
ctttgactgtagttcacaaatcttatttttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgttcctgaatgcattt |
640 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||| | ||| ||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
49179449 |
cttcgactgtatttcacaaatcttatttttgtatatgttttgcagctgtcacccgacaatattaattggaaatacccaaattttgttcctgaatgcattt |
49179548 |
T |
|
| Q |
641 |
catctc |
646 |
Q |
| |
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| |||| |
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| T |
49179549 |
cgtctc |
49179554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 59 - 309
Target Start/End: Original strand, 49178928 - 49179178
Alignment:
| Q |
59 |
tttgaaaaataagcagaatttcaacaagcttcttcatggatgtcccattttggaagatttgattgctaacatttactatatagaaccagcacctcagcct |
158 |
Q |
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||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
49178928 |
tttgaaaaataagacgaatttcaacaagattctctatggatgtcccgttttggaagatttgattgctaacatttactataaagaaccaacacctgagcct |
49179027 |
T |
|
| Q |
159 |
gagcaggtttttactcttagtacagccactgccacaggagagtttaaaatcttatccaagttgattagagccaaaatcaatgtatgcgatgttccattta |
258 |
Q |
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| T |
49179028 |
gatgaggtttttactcttagtaaagccaccgccactggagagtttaaaatcttacccaagttgatcagagttcaaatcaatgcagacgaggttccgttta |
49179127 |
T |
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| Q |
259 |
gagcaattcataatgtcgaatttttatcactcactgtaagttacgttacca |
309 |
Q |
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|||||||||| |||||||| |||||| |||||||||||||||| ||||||| |
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| T |
49179128 |
gagcaattcacaatgtcgagtttttagcactcactgtaagttaagttacca |
49179178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 31246821 - 31246758
Alignment:
| Q |
78 |
ttcaacaagcttcttcatggatgtcccattttggaagatttgattgctaacatttactatatag |
141 |
Q |
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| T |
31246821 |
ttcaacaagcttatttatggatgtgccattttggaagatttgattgctaacatttattatatag |
31246758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 31235509 - 31235395
Alignment:
| Q |
19 |
atcttcctttgctttagacccttcatctggataaggttcgtttgaaaaataagcagaatttcaacaagcttcttcatggatgtcccattttggaagattt |
118 |
Q |
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||||||| | |||| ||||||||||| || || | |||| ||| ||||||||| |||| ||| |||| ||| || | || |||||||||||||||||| | |
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| T |
31235509 |
atcttccctcgcttaagacccttcatttgaatgatgttcatttcaaaaataagaagaacttcgacaaacttgtttacggttgtcccattttggaagatct |
31235410 |
T |
|
| Q |
119 |
gattgctaacattta |
133 |
Q |
| |
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||||||| ||||||| |
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| T |
31235409 |
gattgctgacattta |
31235395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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