View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10128_low_2 (Length: 416)

Name: NF10128_low_2
Description: NF10128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10128_low_2
NF10128_low_2
[»] chr4 (2 HSPs)
chr4 (18-250)||(26480477-26480709)
chr4 (330-406)||(26480325-26480397)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 26480709 - 26480477
Alignment:
Q  18 aatgggacctgctttctttcaacatctcattttccccatcactttctttgtggaatacatcaacagaaaactactatgtccccctattaatttgtttttc 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26480709 aatgggacctgctttctttctacatctcattttccccatcactttctttgtggaatacatcaacagaaaactactatgtccccctattaatttgtttttc 26480610  T
Q  118 tttctagtttcttaagtgctttccatcttatatatatattctcttcgactaaccctcaataatatatacactgcattcattatttaggcttagtaccaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26480609 tttctagtttcttaagtgctttccatcttatatatatattctctttgactaaccctcaataatatatacactgcattcattatttaggcttagtaccaat 26480510  T
Q  218 ccatacaacctgtataaacaaataatgttcttg 250  Q
    |||||||||||||| ||||||||||||||||||    
T  26480509 ccatacaacctgtacaaacaaataatgttcttg 26480477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 26480397 - 26480325
Alignment:
Q  330 acgcacaatatattagtatatattttagtgccaaccaattgttctgcaattgatagaaattaatatcactgcctatg 406  Q
    |||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26480397 acgcacaatatattagtat----tttagtgccaaccaattgttcagcaattgatagaaattaatatcactgcctatg 26480325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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