View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10128_low_3 (Length: 413)
Name: NF10128_low_3
Description: NF10128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10128_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 78418 - 78797
Alignment:
| Q |
17 |
aaaatgaatgcatgacatttaagtaatgctgtgggattgttaatgaaaaatgagaaataaaaaagaaaggagggttgtatttgagtatatggtcctcaca |
116 |
Q |
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| T |
78418 |
aaaatgaatgcatgacatttaagtaatgctgtgggattgttaatgaaaaatgagaaataaaaaagaaaggagggttgtatttgagtatatggtcctcaca |
78517 |
T |
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| Q |
117 |
agtcggtaacagatgttaactgtgataactggtagcccaacgatccactaagtcccagatcagataaatttctgttaaaaatgacacaatcaattaatat |
216 |
Q |
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| T |
78518 |
agtcggtaacagatgttaactgtgataactggtagcccaacgatccactaagtcccagatcagataaatttctgttcaaaatgacacaatcaattaatat |
78617 |
T |
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| Q |
217 |
tcannnnnnnnnnnnnnnnnntcaataattaatgacagagaaaaataatgataatgta---attattattacatttctgtgacagatgagccagagcatt |
313 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
78618 |
tcaatatatatagatatatattcaataattaatgacagagaaaaataatgataatgtaattattattattacatttctgtgacagatgagccagagcatt |
78717 |
T |
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| Q |
314 |
tgattccttcccaattttcaccacaaggatcacctccgcttgatttccagccagagagttgagaaggagaatttaagctg |
393 |
Q |
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| T |
78718 |
tgattccttcccaattttcaccacaaggatcacctccgcttgatttccagccagagagttgagaaggagaattcaagctg |
78797 |
T |
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