View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10128_low_4 (Length: 351)
Name: NF10128_low_4
Description: NF10128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10128_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 1656893 - 1657210
Alignment:
| Q |
18 |
gcactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656893 |
gcactccacaatcaatagcttaataacttattcatttgtcatgcgcacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaat |
1656992 |
T |
|
| Q |
118 |
ttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactct |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1656993 |
ttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctct |
1657092 |
T |
|
| Q |
218 |
ttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaacc |
317 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1657093 |
ttgagattaaaaacgatatcgagctgcgaggcaacgacttattagcacctcatcacagtacttcaaatcgacctctctcagttgtgtgcatttttcaacc |
1657192 |
T |
|
| Q |
318 |
acatgcgtcactcctttg |
335 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
1657193 |
acatgcgtcactcctttg |
1657210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 114 - 335
Target Start/End: Complemental strand, 28246654 - 28246433
Alignment:
| Q |
114 |
taatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28246654 |
taatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaagacatccttgatgtgataagagtctccg |
28246555 |
T |
|
| Q |
214 |
ctctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttc |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28246554 |
ctctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcaccttatcacagtacttcaaattgacctctctcagttgtgtgcatttttc |
28246455 |
T |
|
| Q |
314 |
aaccacatgcgtcactcctttg |
335 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
28246454 |
aaccacatgcgtcactcatttg |
28246433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 334
Target Start/End: Original strand, 644504 - 644789
Alignment:
| Q |
37 |
ttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatct |
136 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
644504 |
ttaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttaaaaaagagaacaaaagtaatttctcatagaagtaaatct |
644603 |
T |
|
| Q |
137 |
gaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgatac |
236 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |
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| T |
644604 |
gaaaaccaaaaacattagaaattcacaattcaaacttcatagcaaacaagacatccttgccgtgataagagtctccgctctttgagatt-aaaacgatac |
644702 |
T |
|
| Q |
237 |
cgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactccttt |
334 |
Q |
| |
|
|||| ||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
644703 |
cgagttgctaggcaacgactt-----------atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactccttt |
644789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 12121660 - 12121601
Alignment:
| Q |
272 |
acaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc |
331 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||| ||||||||| ||||||| |
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|
| T |
12121660 |
acaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcc |
12121601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 1513607 - 1513548
Alignment:
| Q |
272 |
acaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc |
331 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||||||| | |||| || ||||||| |
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|
| T |
1513607 |
acaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc |
1513548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 553384 - 553437
Alignment:
| Q |
281 |
caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactccttt |
334 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||| |||||||| |||||||||| |
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|
| T |
553384 |
caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactccttt |
553437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 546594 - 546622
Alignment:
| Q |
116 |
atttctcatagaagtaaatctgaaaacaa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
546594 |
atttctcatagaagtaaatctgaaaacaa |
546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 151 - 335
Target Start/End: Complemental strand, 11936599 - 11936415
Alignment:
| Q |
151 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgataccgagctgcgaggca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11936599 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctctttgagattaaaaacgataccgagctgcgaggca |
11936500 |
T |
|
| Q |
251 |
acgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttg |
335 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11936499 |
acgacttattagcaccttatcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttg |
11936415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 151 - 335
Target Start/End: Complemental strand, 11948579 - 11948395
Alignment:
| Q |
151 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgataccgagctgcgaggca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11948579 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctctttgagattaaaaacgataccgagctgcgaggca |
11948480 |
T |
|
| Q |
251 |
acgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttg |
335 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11948479 |
acgacttattagcaccttatcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttg |
11948395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 28934954 - 28935007
Alignment:
| Q |
281 |
caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactccttt |
334 |
Q |
| |
|
||||| || |||||| ||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
28934954 |
caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactccttt |
28935007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 31333487 - 31333325
Alignment:
| Q |
18 |
gcactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31333487 |
gcactccacaatcaatagcttaataacttattcatttgtcatgctcacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaat |
31333388 |
T |
|
| Q |
118 |
ttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31333387 |
ttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca |
31333325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 31340217 - 31340055
Alignment:
| Q |
18 |
gcactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31340217 |
gcactccacaatcaatagcttaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaat |
31340118 |
T |
|
| Q |
118 |
ttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31340117 |
ttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca |
31340055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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