View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10128_low_5 (Length: 266)
Name: NF10128_low_5
Description: NF10128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10128_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 49686332 - 49686094
Alignment:
| Q |
18 |
aaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcct |
117 |
Q |
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| T |
49686332 |
aaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcct |
49686233 |
T |
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| Q |
118 |
ttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatt |
217 |
Q |
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| T |
49686232 |
ttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatt |
49686133 |
T |
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| Q |
218 |
tgttttgaaattgaaactcactttttgctaaattctctg |
256 |
Q |
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| T |
49686132 |
tgttttgaaattgaaacccaatttttgctaaattctctg |
49686094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 49690554 - 49690421
Alignment:
| Q |
47 |
aactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgac |
146 |
Q |
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| T |
49690554 |
aactaaagccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgac |
49690458 |
T |
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| Q |
147 |
ttggaaaat---tactacacaagtcatgtgaatttgt |
180 |
Q |
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| T |
49690457 |
ttggaaaatgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 49690378 - 49690330
Alignment:
| Q |
210 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgct |
258 |
Q |
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| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgct |
49690330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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