View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10128_low_9 (Length: 212)
Name: NF10128_low_9
Description: NF10128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10128_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 41047154 - 41046971
Alignment:
| Q |
19 |
ctttctggttaactatttctcactctcttattc---atccaatttcaattcataataatttttggcaaacctaatcacgcttttaggtatggattcatgt |
115 |
Q |
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| T |
41047154 |
ctttctggttaactatttctcactctcttattcttcatccaatttcaattcataataatttctgacaaacctaatcgcgcttttaggtatggattcatgt |
41047055 |
T |
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| Q |
116 |
ttggcagagaatcctctcgcaaagaactctctcatctaattgaagaactccgtagcggtaatccaccacctcctcctcattctt |
199 |
Q |
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| T |
41047054 |
ttggcagagaatcctctcgcaaagaactctctcatctaatcgaagaactccgtagcggtaatccaccacctcctcctcattctt |
41046971 |
T |
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Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 21240273 - 21240440
Alignment:
| Q |
32 |
tatttctcactctcttattcatccaatttcaattcataataatttttggcaaacctaatcacgcttttaggtatggattcatgtttggcagagaatcctc |
131 |
Q |
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| T |
21240273 |
tatttctcactctcttattcatccaatttcaattcataataatttctgacaaacctaatcgcgcttttaggtatggattcatgtttggcagagaatcctc |
21240372 |
T |
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| Q |
132 |
tcgcaaagaactctctcatctaattgaagaactccgtagcggtaatccaccacctcctcctcattctt |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240373 |
tcgcaaagaactctctcatctaatcgaagaactccgtagcggtaatccaccacctcctcctcattctt |
21240440 |
T |
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