View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_high_1 (Length: 825)
Name: NF10129_high_1
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 44 - 811
Target Start/End: Complemental strand, 40562919 - 40562170
Alignment:
| Q |
44 |
ttgtaacttatttcatacagcactctattattatagacatgtccaccaatcgctttcccgttctctctcatctataatttagtctcatttttatttgatt |
143 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40562919 |
ttgtaatttatttcatacagcactctattattatagacatgtccaccaatcgctttcccgttctctctcatctataatttagtctaatttttatttgatt |
40562820 |
T |
|
| Q |
144 |
tcctttataagaaaatatctaaataaacacattaaaaaatgtcaagcaaaagagac--------attagttgaatatcaacaccatagaacgaacctata |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
40562819 |
tcctttataagaaaatatctaaataaacacattaaaaaatgtcaagcaaaacagacaaatttctattagttgaatatcaacaccataga-------tata |
40562727 |
T |
|
| Q |
236 |
tagatagatagatataataataatcaaggatcccatcaatatcaaaataactcaacttgagacttatttcattcttctccctcctttctcttcttcaaac |
335 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40562726 |
-------------ataataa---tcaaggatcccatcaatatcaaaataactcaacttgagacttatttcattcttctccctcctttctcttcttca--- |
40562646 |
T |
|
| Q |
336 |
accttcacctcannnnnnnnccaatatggttactacaacttcatacgtcacaaatgttaaatccaccgttcatttctcatgcatatcaaatcaacaccgt |
435 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40562645 |
accttcacctcattttttttccaatatggttactacaacttcatacgtcacaaatgttaaatccaccgttcatttctcatgcatatcaaatcaacaccgt |
40562546 |
T |
|
| Q |
436 |
tccctcttaaacaccaagctcaagcccaccacccttagaatgagtatgactcaaactccgtattgggcttccttgcatgctgacatagaagctcatctca |
535 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40562545 |
tcccacttaaacaccaagctcaagtccaccacccttagaatgagtatgactcaaactccgtattgggcttccttgcatgctgacatagaagctcatctca |
40562446 |
T |
|
| Q |
536 |
aacaaaccattactatcaaagaacccctcgtggtttttgagcccatgcaccacctcattttcacagctccaaaaacaaccgtgcctgcgttatgcctcgc |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40562445 |
aacaaaccattactatcaaagaacccctcgtggtttttgagcccatgcaccacctcattttcacagctccaaaaacaaccgtgccggcgttatgcctcgc |
40562346 |
T |
|
| Q |
636 |
cacatgtgagctcgtcggaggtcaacgccaccaagccatatccgctgcttcaactttgttactaatggaagcagccacttacacccacgagcatcttcca |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40562345 |
cacatgtgagctcgtcggaggtcaacgccaccaagccatatccgctgcttcagctttgttactaatggaagcagccacttacacccacgagcatcttcca |
40562246 |
T |
|
| Q |
736 |
ctcacagacaggcccgggcctatgatcaatcatgtttatgggcctaacatggagcttttaactggtgatggaattg |
811 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40562245 |
ctcacagacaggcccaggcctatgatcaatcatgtttatgggcctaacatggagcttttaactggtgatggaattg |
40562170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40563001 - 40562953
Alignment:
| Q |
1 |
tggaacgaacattttgacggaagaatgaacacaaccataaaaattgtaa |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40563001 |
tggaacgaacattttgacggaagaatgaacacaaccataaaaattgtaa |
40562953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University