View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_high_12 (Length: 346)
Name: NF10129_high_12
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 83 - 328
Target Start/End: Complemental strand, 4904132 - 4903887
Alignment:
| Q |
83 |
tcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgttaagccagagaaacacgactacagaacaacca |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4904132 |
tcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgttaaaccagagaaacacgactacagaacaacca |
4904033 |
T |
|
| Q |
183 |
gaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
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| T |
4904032 |
gaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaa |
4903933 |
T |
|
| Q |
283 |
ttcaacctacccaaaaaccacctccaagacaacaccttaacagatt |
328 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4903932 |
ttcaacctacccaaaaaccatctccaagacaacaccttaacagatt |
4903887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 322
Target Start/End: Complemental strand, 1557474 - 1557369
Alignment:
| Q |
217 |
cagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaaca |
316 |
Q |
| |
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|||| ||| ||||||| ||||| |||||||||||||||||| || ||||||||||| || | |||| ||||||||| |||||||||| ||||| | |
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| T |
1557474 |
cagcctcaacgcaacagacaattcttcggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaata |
1557375 |
T |
|
| Q |
317 |
ccttaa |
322 |
Q |
| |
|
|||||| |
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| T |
1557374 |
ccttaa |
1557369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 100 - 328
Target Start/End: Original strand, 22153441 - 22153670
Alignment:
| Q |
100 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
198 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
22153441 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22153540 |
T |
|
| Q |
199 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa |
298 |
Q |
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|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22153541 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa |
22153640 |
T |
|
| Q |
299 |
accacctccaagacaacaccttaacagatt |
328 |
Q |
| |
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| |||||||||||||||||||||| ||||| |
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| T |
22153641 |
atcacctccaagacaacaccttaaaagatt |
22153670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 100 - 328
Target Start/End: Original strand, 22209356 - 22209585
Alignment:
| Q |
100 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
198 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
22209356 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22209455 |
T |
|
| Q |
199 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa |
298 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22209456 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa |
22209555 |
T |
|
| Q |
299 |
accacctccaagacaacaccttaacagatt |
328 |
Q |
| |
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| |||||||||||||||||||||| ||||| |
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| T |
22209556 |
atcacctccaagacaacaccttaaaagatt |
22209585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 38185265 - 38185318
Alignment:
| Q |
219 |
gcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaaca |
272 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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|
| T |
38185265 |
gcatcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaaca |
38185318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 43073753 - 43073787
Alignment:
| Q |
288 |
cctacccaaaaaccacctccaagacaacaccttaa |
322 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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| T |
43073753 |
cctacccaacaaccacctccaagacaacaccttaa |
43073787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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