View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_high_19 (Length: 272)
Name: NF10129_high_19
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 47464344 - 47464098
Alignment:
| Q |
18 |
cttttaacacctcagatgctggatcccctacaatacagagatatcacctattcaagaaaaaatactgatgcattgacatttaattagatataaaccatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47464344 |
cttttaacacctcagatgctggatcccctacaatacagagatatcacctattcaagaaaaaatactgatgcattgacatttaattagatataaaccatac |
47464245 |
T |
|
| Q |
118 |
tataactacaacaacaaccagagtcttttcccaactatgtgagttcaattaaattgatcaaacaacagcataataggttaataacaaggatgaattagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47464244 |
cataactacaacaacaaccagagtcttttcccaactatgtgagttcaattaaattgatcaaacaacagcataataggttaataacaaggatgaattagta |
47464145 |
T |
|
| Q |
218 |
tatttactaatagataatttaaatttcgatctcttatgttctctgct |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47464144 |
tatttactaatagataatttaaatttcgatctcttatgttcactgct |
47464098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 6500128 - 6500025
Alignment:
| Q |
18 |
cttttaacacctcagatgctggatcccctaca-atacagaga--tatcacctattcaa-gaaaaaatactgatgcattgacatttaattagatataaacc |
113 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||||| ||| ||| |||||| | |||| |||||||||| ||||||| ||||||||||||| | |
|
|
| T |
6500128 |
cttttaatacctcacttgctggatcccctacagatacagagagatatgacccattcaatggaaaattactgatgcagtgacattgaattagatataaatc |
6500029 |
T |
|
| Q |
114 |
atac |
117 |
Q |
| |
|
|||| |
|
|
| T |
6500028 |
atac |
6500025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 31737662 - 31737493
Alignment:
| Q |
18 |
cttttaacacctcagatgctggatcccctaca-atacagaga--tatcacctattcaa-gaaaaaatactgatgcattgacatttaattagatataaacc |
113 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||||| ||| ||| |||||| | |||| |||||||||| |||||| ||||||||||||| | |
|
|
| T |
31737662 |
ctttcaacacctcacttgctggatcccctacagatacagagagatatgacccattcaatggaaaattactgatgcagcgacattgaattagatataaatc |
31737563 |
T |
|
| Q |
114 |
atactataactacaacaacaaccagagtcttttcccaactatgtgagttcaattaaattgatcaaacaacagcataa |
190 |
Q |
| |
|
|| || |||| ||||| | ||||||||| | |||||||||| || ||||||| |||||||||||| ||||| |
|
|
| T |
31737562 |
at------accacaaatacaacgaaagtcttttctc-actatgtgagatcgattaaatcgatcaaacaacatcataa |
31737493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University