View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_high_20 (Length: 272)
Name: NF10129_high_20
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 7294407 - 7294667
Alignment:
| Q |
2 |
cacttaatcttgtaccagcttgttcatgtagaagcctaattcaattgcttttgcattgccaactattagtatcaagatgatgatgaggaatcctagacct |
101 |
Q |
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| T |
7294407 |
cacttaatcttggaccagcttgttcatgtagaaacctaattcaattgcttttgcattgccaactattagtatcaagatgatgatgaggaatcctagacct |
7294506 |
T |
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| Q |
102 |
gatgagtctgatgcatcctgtttgtgttgtgcataaatttctatgtgctctctgaaattctacttacataagcttctagctgttttggttttcataaact |
201 |
Q |
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| T |
7294507 |
gatgagtctgatgcatcctgtttgtgttgtgcataaatttctatgtgctctctgaaattctacttacataagcttctagctgttttggttttcataaact |
7294606 |
T |
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| Q |
202 |
agctgcaataagttcggttgataagttagttcaattgttaaaagaatttgatttgcctatg |
262 |
Q |
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| T |
7294607 |
agctgcaataagttcggttgataagttagttcacttgttaaaagaatttgatttgcctatg |
7294667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 7290670 - 7290864
Alignment:
| Q |
2 |
cacttaatcttgtaccagcttgttcatgtagaagcctaattcaattgcttttgcattgccaactattagtatcaagatgatgatgaggaatcctagacct |
101 |
Q |
| |
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|||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||| |
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| T |
7290670 |
cacttaatcttg-accagcttgttcttgtag-----taattcaattgcttttccattgccaactattagtataaagatgatgatgaggaattttacaccc |
7290763 |
T |
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| Q |
102 |
gatgagtctgatgcatcctgtttgtgttgtgcataaa-tttctatgtgctctctgaaattctacttacataagcttctagctgttttggttttcataaac |
200 |
Q |
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| T |
7290764 |
catgaatctgatgaatcctattagtgataagtataaattttttatgtgctgt------------ttatataagcttctagccgttttagttttcataaac |
7290851 |
T |
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