View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_high_25 (Length: 254)

Name: NF10129_high_25
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_high_25
NF10129_high_25
[»] chr2 (3 HSPs)
chr2 (1-242)||(37844673-37844917)
chr2 (30-71)||(33197360-33197401)
chr2 (25-77)||(28803621-28803673)
[»] chr7 (2 HSPs)
chr7 (25-83)||(1431417-1431475)
chr7 (27-71)||(27481415-27481459)
[»] chr8 (4 HSPs)
chr8 (74-108)||(10923604-10923638)
chr8 (25-57)||(6950239-6950271)
chr8 (74-114)||(26473780-26473820)
chr8 (31-71)||(31875680-31875720)
[»] chr5 (2 HSPs)
chr5 (25-71)||(20982256-20982302)
chr5 (25-77)||(6739775-6739827)
[»] chr4 (2 HSPs)
chr4 (23-77)||(24936212-24936265)
chr4 (30-78)||(24193493-24193541)
[»] chr3 (1 HSPs)
chr3 (29-71)||(29094288-29094330)
[»] chr1 (2 HSPs)
chr1 (25-70)||(24263261-24263306)
chr1 (74-115)||(25479582-25479623)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37844917 - 37844673
Alignment:
Q  1 tttcactcttccaaacagtatctgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataagctctctagaatagcta 100  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844917 tttcactctttcaaacagtatcttaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataagctctctagaatagcta 37844818  T
Q  101 atgaaaacgacttat---ggagacacactaaccagtttgcaattgaacacttacctttaatccttgtgtaagagtacggtcaccgggtccatgtgacttt 197  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844817 atgaaaacgacttataatggagacacactaaccagtttgcaattgaacacttacctttaatccttgtgtaagagtacggtcaccgggtccatgtgacttt 37844718  T
Q  198 agccattctgctgcaaccacatcattgccaacggcatcctttgct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37844717 agccattctgctgcaaccacatcattgccaacggcatcctttgct 37844673  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 33197401 - 33197360
Alignment:
Q  30 cttatagcataaaagcttatcatataagtgtttatctataag 71  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  33197401 cttataacataaacgcttatcatataagtgcttatctataag 33197360  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 28803673 - 28803621
Alignment:
Q  25 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 77  Q
    ||||| |||| ||||||| |||||||||||||||| |||| ||||||| ||||    
T  28803673 aagtgtttatggcataaatgcttatcatataagtgcttatatataagttattt 28803621  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 1431475 - 1431417
Alignment:
Q  25 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataa 83  Q
    |||| ||||||||||||  ||||||||||||||||||||| ||||||| |||| |||||    
T  1431475 aagttcttatagcataagtgcttatcatataagtgtttatgtataagttatttccataa 1431417  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 27481459 - 27481415
Alignment:
Q  27 gtgcttatagcataaaagcttatcatataagtgtttatctataag 71  Q
    |||||||||||||||| | |||| |||||||||||||| ||||||    
T  27481459 gtgcttatagcataaatgtttattatataagtgtttatgtataag 27481415  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 10923638 - 10923604
Alignment:
Q  74 attttcataagctctctagaatagctaatgaaaac 108  Q
    |||||||||||||||| ||||||||||||||||||    
T  10923638 attttcataagctctccagaatagctaatgaaaac 10923604  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 6950239 - 6950271
Alignment:
Q  25 aagtgcttatagcataaaagcttatcatataag 57  Q
    |||||||||||||||||| ||||||||||||||    
T  6950239 aagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 26473780 - 26473820
Alignment:
Q  74 attttcataagctctctagaatagctaatgaaaacgactta 114  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  26473780 attttcataagctctctaggatagcttatgaaaacaactta 26473820  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 31875720 - 31875680
Alignment:
Q  31 ttatagcataaaagcttatcatataagtgtttatctataag 71  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  31875720 ttatagcataagcgcttatcatataagtgcttatctataag 31875680  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 20982302 - 20982256
Alignment:
Q  25 aagtgcttatagcataaaagcttatcatataagtgtttatctataag 71  Q
    |||||||||||||||||  |||||||||||||||| |||| ||||||    
T  20982302 aagtgcttatagcataagtgcttatcatataagtgcttatgtataag 20982256  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 6739775 - 6739827
Alignment:
Q  25 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 77  Q
    ||||||||||| |||||  | |||||||||||| |||||| ||||||||||||    
T  6739775 aagtgcttatatcataagcgtttatcatataagcgtttatgtataagtcattt 6739827  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 24936212 - 24936265
Alignment:
Q  23 tgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 77  Q
    |||||||||||||||||||| |||||| ||||||||| |||| ||||||| ||||    
T  24936212 tgaagtgcttatagcataaaggcttat-atataagtggttatgtataagttattt 24936265  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 24193493 - 24193541
Alignment:
Q  30 cttatagcataaaagcttatcatataagtgtttatctataagtcatttt 78  Q
    ||||||||||||| |||||||||||||||  |||| ||||||| |||||    
T  24193493 cttatagcataaacgcttatcatataagtacttatgtataagttatttt 24193541  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 29094288 - 29094330
Alignment:
Q  29 gcttatagcataaaagcttatcatataagtgtttatctataag 71  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  29094288 gcttatagcataaacacttatcatataagtgtttatgtataag 29094330  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 24263306 - 24263261
Alignment:
Q  25 aagtgcttatagcataaaagcttatcatataagtgtttatctataa 70  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||||    
T  24263306 aagtgcttatagcataaacgtttagcatataagtgtttatgtataa 24263261  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 25479623 - 25479582
Alignment:
Q  74 attttcataagctctctagaatagctaatgaaaacgacttat 115  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  25479623 attttcataagctctctaggatagcttatgaaaacaacttat 25479582  T

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