View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_high_27 (Length: 250)
Name: NF10129_high_27
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 742170 - 742413
Alignment:
| Q |
1 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742170 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
742269 |
T |
|
| Q |
101 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742270 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttc |
742369 |
T |
|
| Q |
201 |
tccacttcttcgaaaagtagcacaatgtttggccttcttctcac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742370 |
tccacttcttcgaaaagtagcacaatgtttggccttcttctcac |
742413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 42449302 - 42449543
Alignment:
| Q |
3 |
acttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacga |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| || |
|
|
| T |
42449302 |
acttcctgcattactcgatcgtgagctacttggatggtacattttcctgaaagtccacttaagagatgatcggcaccaaggttcgaggtcatgataatga |
42449401 |
T |
|
| Q |
103 |
ccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctc |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
42449402 |
ccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaatttgttgattactgaagtatgtgctttctc |
42449501 |
T |
|
| Q |
203 |
cacttcttcgaaaagtagcacaatgtttggccttcttctcac |
244 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
42449502 |
cacttcttccaaaagtagcacactgtttggccttcttctcac |
42449543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 740079 - 740319
Alignment:
| Q |
3 |
acttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacga |
102 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||| || |
|
|
| T |
740079 |
acttcctgcattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaaggtttgaggtcatgataatga |
740178 |
T |
|
| Q |
103 |
ccgtgt-----tcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgct |
197 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || |||| | |||||| ||||||||| |
|
|
| T |
740179 |
ctgtgttcctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgct |
740278 |
T |
|
| Q |
198 |
ttctccacttcttcgaaaagtagcacaatgtttggccttct |
238 |
Q |
| |
|
|||||||||| || ||||||| |||| ||| ||||||||| |
|
|
| T |
740279 |
ttctccacttgctctaaaagtatcacactgtgtggccttct |
740319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 10046801 - 10046583
Alignment:
| Q |
1 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
100 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
10046801 |
ttacttccagcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatgataat |
10046702 |
T |
|
| Q |
101 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttc |
200 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |||||| ||||||||||| |
|
|
| T |
10046701 |
gactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgctttc |
10046602 |
T |
|
| Q |
201 |
tccacttcttcgaaaagta |
219 |
Q |
| |
|
|| ||||| || ||||||| |
|
|
| T |
10046601 |
tctacttcatcaaaaagta |
10046583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38708406 - 38708308
Alignment:
| Q |
1 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataa |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || || |||||||| ||||||||||||| |
|
|
| T |
38708406 |
ttacttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaaggtttgaggtcatgataa |
38708308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 45468462 - 45468309
Alignment:
| Q |
1 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
45468462 |
ttacttcctgcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatgatgat |
45468363 |
T |
|
| Q |
101 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
154 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
45468362 |
cacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University