View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_high_31 (Length: 241)

Name: NF10129_high_31
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_high_31
NF10129_high_31
[»] chr2 (2 HSPs)
chr2 (4-234)||(34386516-34386740)
chr2 (17-122)||(17981544-17981648)
[»] chr3 (3 HSPs)
chr3 (39-122)||(38331196-38331279)
chr3 (8-105)||(21223461-21223558)
chr3 (27-127)||(30995950-30996050)
[»] scaffold0182 (1 HSPs)
scaffold0182 (39-122)||(26399-26482)
[»] chr4 (2 HSPs)
chr4 (52-122)||(15133456-15133526)
chr4 (39-122)||(32005136-32005219)
[»] chr1 (1 HSPs)
chr1 (42-122)||(44913180-44913260)
[»] chr7 (1 HSPs)
chr7 (39-122)||(29059873-29059956)
[»] scaffold0009 (1 HSPs)
scaffold0009 (41-122)||(27215-27296)
[»] chr6 (1 HSPs)
chr6 (21-122)||(12836887-12836988)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 34386516 - 34386740
Alignment:
Q  4 ttgaattcagattcagtcttagacatgcaacggccttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctg 103  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||||| |||||||||||| || ||||||||||||||||||| | |||| |||| ||||||    
T  34386516 ttgagttcagattcaatcttagacatgcagcggccctaaaactctcatagagagcttgccgtctatttggatctcataatgctcgagagattaatctctg 34386615  T
Q  104 cagttacgcgcggaggatatctggattagatnnnnnnnnnnnncaaattatgagatgtggtagaggtgataaggttcgtacatataaagtccatgttctt 203  Q
    |||||||||||||||       || ||||||            |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34386616 cagttacgcgcggaga------ggtttagataaaaataaaaaacaaattatgagatgcggtaaaggtgataaggttcgtacatataaagtccatgttctt 34386709  T
Q  204 tttcttcttctttggatcattaccaatttgc 234  Q
    |||||||||||||||||||||||||||||||    
T  34386710 tttcttcttctttggatcattaccaatttgc 34386740  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 17981544 - 17981648
Alignment:
Q  17 cagtcttagacatgcaacggccttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcgg 116  Q
    ||||||| | ||||||||  | ||||||||||||  ||||||||| |||  |||||| || || |||| | |||| ||||||||| |||||| |||||||    
T  17981544 cagtcttgggcatgcaacaacattaaaactcttagggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcgg 17981642  T
Q  117 aggata 122  Q
    ||||||    
T  17981643 aggata 17981648  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 38331196 - 38331279
Alignment:
Q  39 ttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    |||||||||||| |||||||||| |||| |||||| || || ||||||||||  ||||||||| |||||| | |||||||||||    
T  38331196 ttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggata 38331279  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 21223558 - 21223461
Alignment:
Q  8 attcagattcagtcttagacatgcaacggccttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgca 105  Q
    ||||| |||||||||||||||||||   |  |||||| | |||  ||||||||||||||||||| |||| || |||| |  |||||||||||||||||    
T  21223558 attcaaattcagtcttagacatgcagtagtgttaaaatttttagggagagcttgtcgcctatttagatcccacaatgctcaagaaattagtctctgca 21223461  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 30996050 - 30995950
Alignment:
Q  27 catgcaacggccttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggatatctg 126  Q
    |||||||| || ||||||||||||  |||||  || |||| || ||| || || |||| | |||  ||||||||| |||||| |||||||||||||||||    
T  30996050 catgcaacagcgttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctg 30995951  T
Q  127 g 127  Q
    |    
T  30995950 g 30995950  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 26399 - 26482
Alignment:
Q  39 ttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    ||||||||||||  |||||| || |||| |||||| || || |||||| |||| ||||||||| |||||| |||||||||||||    
T  26399 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggata 26482  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 15133456 - 15133526
Alignment:
Q  52 agagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    ||||||||||||| |  ||||| || || ||||||||||| ||||||||| |||||| |||||||||||||    
T  15133456 agagagcttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggata 15133526  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 32005219 - 32005136
Alignment:
Q  39 ttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    ||||||||||||  |||||  || ||||||||| ||||||| |||| | |||| ||||||||| ||| ||| ||||||||||||    
T  32005219 ttaaaactcttagggagagtctgccgcctatttagatctcaaaatgctcgagagattagtctccgcaattatgcgcggaggata 32005136  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 44913180 - 44913260
Alignment:
Q  42 aaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    |||||||||  ||||||||| |||| || ||| || || |||| | |||| |||||||||||||||||||||| |||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggata 44913260  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 29059873 - 29059956
Alignment:
Q  39 ttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    ||||||||||||  |||||| || |||| |||||| || || |||| |||||  ||||||||| |||||| |||||||||||||    
T  29059873 ttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggata 29059956  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 27296 - 27215
Alignment:
Q  41 aaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggaggata 122  Q
    ||||||||||  ||||||||| |||| ||||||||||||  ||| | |||  ||||||||  |||||| |||||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggata 27215  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 12836988 - 12836887
Alignment:
Q  21 cttagacatgcaacggccttaaaactcttatagagagcttgtcgcctatttggatctcataatgtttgagaaattagtctctgcagttacgcgcggagga 120  Q
    ||||| |||||| | || ||||||||||||  ||||||| | |||| |||||| || || |||| |||||  |||||||||  ||||| |||||||||||    
T  12836988 cttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggagga 12836889  T
Q  121 ta 122  Q
    ||    
T  12836888 ta 12836887  T

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