View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_high_32 (Length: 240)
Name: NF10129_high_32
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_32 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9452532 - 9452750
Alignment:
| Q |
18 |
tatcatttacatgctttcgtaaaattcactactctggcttaattacttacatctatatatttttagaatttgctattacttacatcttcaacaaccttaa |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9452532 |
tatcatttacatgttttcgtaaaattcactactctggcttaattacttacatctatatatttttagacattgctattacttacatcttcaacagccttaa |
9452631 |
T |
|
| Q |
118 |
ttactctataatacatgtacaagaaattttcagtgttttgaaggaattgctatataattttacaatcagtttaactatccatgtctctagaatcagacta |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
9452632 |
ttact----aatacatgtacaagaaattttcagtgttttgaaggaattgctatataattttacagtcagtttaactattaatgtctctagaatcagacta |
9452727 |
T |
|
| Q |
218 |
ttatataattataattgtgtaat |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9452728 |
ttatataattataattgtgtaat |
9452750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 21546946 - 21546723
Alignment:
| Q |
18 |
tatcatttacatgctttcgtaaaattcactactctggcttaattacttacatctatatatttttagaatttgctattacttacatcttcaacaaccttaa |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| | ||||||||||||| | | |||||| |
|
|
| T |
21546946 |
tatcatttacatgttttcgtaaaattcactactctagcttaattacttacatctatatatttttaaacattgttcttacttacatctttatcggccttaa |
21546847 |
T |
|
| Q |
118 |
ttactctataatacatgtacaagaaattttc--agtgttttgaaggaattgctatataattttacaatcagtttaactatccatgtctctagaatcagac |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
21546846 |
ttactctatattacatgtacaagaaattttcagagtgttttgaaggaattgctatataa-tttacaatcagtttaactattcatgtctctagaatcaaac |
21546748 |
T |
|
| Q |
216 |
tattatataattataattgtgtaat |
240 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
21546747 |
tattatataattataactgtgtaat |
21546723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University