View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_high_34 (Length: 233)
Name: NF10129_high_34
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 53126534 - 53126333
Alignment:
| Q |
14 |
gcacagagaaaaaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagtaagttaatgaaactcaggtgatatttattattaagagcaa |
113 |
Q |
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| T |
53126534 |
gcacagagaaaaaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagtaagttaatgaaactcaggtgatatttattattaagagcaa |
53126435 |
T |
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| Q |
114 |
gtgaacagcttattgattcttctcattgttttcttgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagagatt |
213 |
Q |
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| T |
53126434 |
gtgaacagcttattgattcttctcattgttttcttgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagagatt |
53126335 |
T |
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| Q |
214 |
tg |
215 |
Q |
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|| |
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| T |
53126334 |
tg |
53126333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 53108732 - 53108529
Alignment:
| Q |
14 |
gcacagagaaaaaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagtaagttaatgaaactcaggtgatatttatt--attaagagc |
111 |
Q |
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||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||| |
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| T |
53108732 |
gcacagattaaaaccaggcctgaccgaacgttttgaattgttcgtcaataagcatgaagtaagttaatgaaactcaggtgattattattaaaataaaagc |
53108633 |
T |
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| Q |
112 |
aagtgaacagcttattgattcttctcattgttttcttgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagaga |
211 |
Q |
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| T |
53108632 |
aagttaacaactttttgattcttgtcactgtttgtctgttaattttcagctttgcaacggctatactgaattgaatgatccagtagtgcaacgtcagaga |
53108533 |
T |
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| Q |
212 |
tttg |
215 |
Q |
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|||| |
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| T |
53108532 |
tttg |
53108529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 53113826 - 53113641
Alignment:
| Q |
24 |
aaaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagtaagttaatgaaactcaggtgatatttattattaagagcaagtgaacagct |
123 |
Q |
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| T |
53113826 |
aaaccaggcctgacagaacgttttgagttgattgttaataagcttaaagtaagttcatgaa-ctcaggcgattattattagtaa-----agttaacaact |
53113733 |
T |
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| Q |
124 |
tattgattcttctcattgttttcttgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagagatttg |
215 |
Q |
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| T |
53113732 |
ttttgattcttgtcactgtttttctgttaactttcagctttccaatgcatatactgaattgaatgatcctgtagtgcaacgtcagagatttg |
53113641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 53117965 - 53117898
Alignment:
| Q |
148 |
tgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagagatttg |
215 |
Q |
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| T |
53117965 |
tgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtgcaacgtcagagatttg |
53117898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 53118058 - 53117999
Alignment:
| Q |
14 |
gcacagagaaaaaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagt |
73 |
Q |
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| T |
53118058 |
gcacagatcaaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagt |
53117999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 15841160 - 15841221
Alignment:
| Q |
14 |
gcacagagaaaaaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagtaa |
75 |
Q |
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| T |
15841160 |
gcacagaacaaaaccaggcctgactgaacgttttgaattgtttatcaacaaacatgaggtaa |
15841221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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