View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_high_4 (Length: 525)
Name: NF10129_high_4
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 8446440 - 8446936
Alignment:
| Q |
14 |
catcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaagtgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446440 |
catcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaattgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatc |
8446539 |
T |
|
| Q |
114 |
tgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttgctccggtctgaaaaaatctcgcattcaagcattagggacatggctggactgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8446540 |
tgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttgctccggtctgaaaaaatctcgcattcaagcattagggacatggttggactgt |
8446639 |
T |
|
| Q |
214 |
ttggtctagaatatcaaagagctaccaatgttccaaatgtgtgaatgtgattaatgaatcaaggttttgggtacaaatcgatgacctttttccacgactc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446640 |
ttggtctagaatatcaaagagctaccaatgttccaaatgtgtgaatgtgattaatgaatcaaggttttgggtacaaatcgatgacctttttccacgactc |
8446739 |
T |
|
| Q |
314 |
acgtgtggatatttccgtccaccaccttgacacattgtttcttgacgaagaagtaaacaaatcagcggtgtcggcatcagcagcagccaccaagtagtga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446740 |
acgtgtggatatttccgtccaccaccttgacacattgtttcttgacgaagaagtaaacaaatcagcggtgtcggcatcagcagcagccaccaagtagtga |
8446839 |
T |
|
| Q |
414 |
atattgggaagatgtgaaaggtcggcaagtgtgaactcatcaccagccaagtagcgagtttccccaagcctcttatcgtacacatcaagcactttct |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446840 |
atattgggaagatgtgaaaggtcggcaagtgtgaattcatcaccagccaagtagcgagtttccccaagcctcttatcgtacacatcaagcactttct |
8446936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University