View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_107 (Length: 230)
Name: NF10129_low_107
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 29341453 - 29341255
Alignment:
| Q |
1 |
cacaatcaccaaaataaaattttagatggtatcataattaggtaatcattgagatctttaaattgaaaaatatgaagccttgttggnnnnnnnnncattt |
100 |
Q |
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| T |
29341453 |
cacaatcaccaaaataaaattttagatggtatcataattaggtaatcattgagatctttaaattgaaaaatatgaagccttgttggagaaaa-------- |
29341362 |
T |
|
| Q |
101 |
tacatacaatcatagtttcttttattgaacatataattaatcatagttgtcttgtaaatttaaaagatttcattattgttgatcttgttgggcctgagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
29341361 |
-acatacaatcatagtttcttttattgaacatataattaatcatagttgtcttataaatttaaaagatttcattattgttgatcatgtcgggcctgagat |
29341263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 29357477 - 29357274
Alignment:
| Q |
4 |
aatcaccaaaataaaattttagatggtatcataattaggtaatcattgagatctttaaattgaaaaatatgaagccttgttggnnnnnnnnncattttac |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| | ||| ||| |
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| T |
29357477 |
aatcaccaaaataaaattttagatggtatcataattaggtaatcattgagatcttgaaatttaaaaatatgaaaccttgttagagaaaaaaa-attctac |
29357379 |
T |
|
| Q |
104 |
atacaatcatagtttcttttattgaacatataattaatcatagttgtcttgtaaatttaaaagatttcattattgttgatcttgttgggcctgagatcac |
203 |
Q |
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||||||| || |||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||| |||||| || ||| | | || ||||||||||| |
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| T |
29357378 |
atacaattatggttttttttattgaacatataatcaatcatagttgttttgtaaatttaaaagttttaattattttttatcctatcggacctgagatcac |
29357279 |
T |
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| Q |
204 |
tgaat |
208 |
Q |
| |
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||||| |
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| T |
29357278 |
tgaat |
29357274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 44660332 - 44660412
Alignment:
| Q |
3 |
caatcaccaaaataaaattttagatggtatcataattaggtaatcattgagatctttaaattgaaaaatatgaagccttgt |
83 |
Q |
| |
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|||||| |||| |||||||||||| ||| |||||||||||||||||| || || ||||| | |||||||||||||||| |
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| T |
44660332 |
caatcagcaaagcaaaattttagataaaatcttaattaggtaatcattgaaatattgaaatttacaaatatgaagccttgt |
44660412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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