View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_109 (Length: 229)
Name: NF10129_low_109
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18577175 - 18576955
Alignment:
| Q |
1 |
cgtttgatttgattttccctctttcacaacattaacatttcttctatccgtggattcacaacttacccataacgtgtttccgtgcacataactacttcag |
100 |
Q |
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||||||||||||| ||| |||||| |||||||||||||| | ||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
18577175 |
cgtttgatttgatcttctctcttttgcaacattaacatttactttatccacgggttcacaacttacccataacgtattttcgtgcacataactacttcag |
18577076 |
T |
|
| Q |
101 |
ttaatagcgctataaacatggaacatgagtacaccgtcaaagtgtcaaattccatcgaattttaactgattctaacactcccacagtgtgcgtggatctc |
200 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
18577075 |
ttaatggcgctataaacatggaacatgagtacaccgtcaaagtgtcaaattccatcgaattttaactgattctaacactcccacgatgtgtgtggatctc |
18576976 |
T |
|
| Q |
201 |
aatatactttagatggttttg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
18576975 |
aatatactttagatggttttg |
18576955 |
T |
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