View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_11 (Length: 434)
Name: NF10129_low_11
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 3640764 - 3641172
Alignment:
| Q |
18 |
cctccaaaatcagtggaactcaaaatgaattaggacaggacttttgagggttttggaggataatatatcttcagtttactaataaataaattattaatca |
117 |
Q |
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| T |
3640764 |
cctccaaaatcagtggaactcaaaatgaattaggacaggacttttgagggttttggaggataatatatcttcagtttactaataaataaattattaatca |
3640863 |
T |
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| Q |
118 |
tatccctcatttgtctgacattaaaaatcccaaacacaccttagcgtataagatgaaccttactagtaattagtaactgattatactaatcttactataa |
217 |
Q |
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| T |
3640864 |
tatccctcatttgtctgacattaaaaatcccaaacacaccttagcgtataagatgaaccttactagtaattagtaactgattatactaatcttactataa |
3640963 |
T |
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| Q |
218 |
tgtaatatctctgttacattgtatgaagtctgaacttactcctctctcccttttcaannnnnnnncttcatgttgtgcagcatggaggtggacgggcgtt |
317 |
Q |
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| T |
3640964 |
tgtaatatctctgttacattgtatgaagtctgaacttactcctctctcccttttcaattttttttcttcatgttgtgcagcatggaggtggacgggcgtt |
3641063 |
T |
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| Q |
318 |
caaaactcttcaatggttagttcggagcaccgatgaagaaaggactttgatgggagctattgtagttgaagaaaaggccacgatatcacgtcacctgaag |
417 |
Q |
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| T |
3641064 |
caaaactcttcaatggttagttcggagcaccgatgaagaaaggactttgatgggagctattgtagttgaagaaaaggccacgatatcacgtcacctgaag |
3641163 |
T |
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| Q |
418 |
tcctatgct |
426 |
Q |
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| T |
3641164 |
tcctgtgct |
3641172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 3639681 - 3639850
Alignment:
| Q |
69 |
tttggaggataatatatcttcagtttactaataaataaattattaatcatatccctcatttgtctgacattaaaaatcccaaacacaccttagcgtataa |
168 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3639681 |
tttggagtaaaatacatcttcagtttactaataaataaattattaatcatagccctcatttgtctgacattaaaaatcccaaacacaccttagtgtataa |
3639780 |
T |
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| Q |
169 |
gatgaaccttactagtaattagtaactgattatacta-----atcttactataatgtaatatctctgtta |
233 |
Q |
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| T |
3639781 |
catgaaccttactagtaattagtaactgattatactaatcttatcttactataatgtaatatctctgtta |
3639850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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