View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_112 (Length: 220)
Name: NF10129_low_112
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_112 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 5328120 - 5328305
Alignment:
| Q |
13 |
aagaacaagaaggaaaaacctgccattagtttcctaggtagagacctcctaaaatcccataacttacaaggtgatgtgaggattgagaggaacataacca |
112 |
Q |
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| T |
5328120 |
aagaacaagaaggcaaaacctgccattagtttcctaggtagagacctcctaaaatcccataactcacaaggtgatgtgaggattgagaggaacataacca |
5328219 |
T |
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| Q |
113 |
ctgatgccaatgaacttgcaagtgccacaacatccatgaccatgaacactacaaatataggatgatggagtaaccttgggaagccg |
198 |
Q |
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| T |
5328220 |
ctgatgccaatgaacttgcaagtgccacaacatccatgaccatgaacactacaaatataggatgatggagtaaccttgggaagccg |
5328305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 5317491 - 5317306
Alignment:
| Q |
13 |
aagaacaagaaggaaaaacctgccattagtttcctaggtagagacctcctaaaatcccataacttacaaggtgatgtgaggattgagaggaacataacca |
112 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| | |
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| T |
5317491 |
aagaacaagaatgcgaaacctgccattagtttcctaggtagagacctcctaaaatcccacaactcacaaggtgatgtgaggattgagagaaacataacaa |
5317392 |
T |
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| Q |
113 |
ctgatgccaatgaacttgcaagtgccacaacatccatgaccatgaacactacaaatataggatgatggagtaaccttgggaagccg |
198 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||| |||||| |
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| T |
5317391 |
ctgaagccaatgaacttgcaagggccacaacatccatgactgtgaacactacgaatataggatgatgaagtaatcttggcaagccg |
5317306 |
T |
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