View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_114 (Length: 208)

Name: NF10129_low_114
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_114
NF10129_low_114
[»] chr4 (8 HSPs)
chr4 (12-189)||(1141604-1141781)
chr4 (38-189)||(1136976-1137127)
chr4 (105-174)||(1181267-1181336)
chr4 (59-174)||(1133436-1133551)
chr4 (65-174)||(1171978-1172088)
chr4 (105-174)||(1148464-1148533)
chr4 (62-143)||(1160039-1160120)
chr4 (74-174)||(1164600-1164700)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 1141604 - 1141781
Alignment:
Q  12 cagagacaagcaaacatgtttttaattgtaggcctatacaaaaactacataacatgatactaaactagtggaagtgaaacaatatgattataaccaaaag 111  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1141604 cagagacaagcaaacatgtttttaatgctaggcctatacaaaagctacataacacgatactaaactagtggaagtgaaacaatatgattataaccaaaag 1141703  T
Q  112 ctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcagaactattggagtgatga 189  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1141704 ctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcagaactattggagtgatga 1141781  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 1136976 - 1137127
Alignment:
Q  38 tgtaggcctatacaaaaactacataacatgatactaaactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagac 137  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||| ||||  |||||||||||    
T  1136976 tgtaggcctatacaaaagctacataacatgatactaaactagtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagac 1137075  T
Q  138 acaaacgtaaggccctgcagataatgatgatgcagaactattggagtgatga 189  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  1137076 acaaacataaggccctgcagataatgatggtgcagaactattggagcgatga 1137127  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 1181267 - 1181336
Alignment:
Q  105 ccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcagaa 174  Q
    |||||||||||||||||||||||| |||||||||||||  | ||||| ||||||||||| || |||||||    
T  1181267 ccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaa 1181336  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 1133436 - 1133551
Alignment:
Q  59 cataacatgatactaaactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcaga 158  Q
    |||||||||||||| ||||| ||||||||||||||  | |||| | ||||||| | | ||| ||||| |||||||||| |||||  |||| ||||||| |    
T  1133436 cataacatgatacttaactactggaagtgaaacaaggtaattaaagccaaaagattacacataaaataaatgttgagaaacaaaaataagtccctgcata 1133535  T
Q  159 taatgatgatgcagaa 174  Q
     ||||||| |||||||    
T  1133536 aaatgatgctgcagaa 1133551  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 1171978 - 1172088
Alignment:
Q  65 atgatactaaactagtggaagtgaaacaa-tatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatg 163  Q
    |||| ||||||||| | |||||||||||| | || ||| | |||||| |||||||||||||||||||| ||||||| ||  | ||||| |||||||||||    
T  1171978 atgaaactaaactactagaagtgaaacaaatgtgtttaaagccaaaaactcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatg 1172077  T
Q  164 atgatgcagaa 174  Q
     || |||||||    
T  1172078 ttgttgcagaa 1172088  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 1148464 - 1148533
Alignment:
Q  105 ccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcagaa 174  Q
    ||||||||||| ||| ||||||||||||||||||||||  | |||| |||||||||||| || |||||||    
T  1148464 ccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaa 1148533  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 1160039 - 1160120
Alignment:
Q  62 aacatgatactaaactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaac 143  Q
    ||||||||||| || |||||||||| |||||| ||||||| | | |||| |||||||| ||||| ||||||| |||||||||    
T  1160039 aacatgatacttaattagtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaac 1160120  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 1164600 - 1164700
Alignment:
Q  74 aactagtggaagtgaaacaatatgattataaccaaaagctcaaacacaaaatcaatgttgagacacaaacgtaaggccctgcagataatgatgatgcaga 173  Q
    |||| ||||||||||||| || ||  || | ||||||||||| ||| |||||||||||||| |||||||  | ||||||| | ||||||| |||||||||    
T  1164600 aacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccctcccgataatgttgatgcaga 1164699  T
Q  174 a 174  Q
    |    
T  1164700 a 1164700  T

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