View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_115 (Length: 201)

Name: NF10129_low_115
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_115
NF10129_low_115
[»] chr1 (5 HSPs)
chr1 (31-179)||(16950647-16950795)
chr1 (26-115)||(18379388-18379477)
chr1 (57-117)||(18389408-18389468)
chr1 (31-98)||(22239177-22239244)
chr1 (31-93)||(8902734-8902796)
[»] chr7 (6 HSPs)
chr7 (31-116)||(31268395-31268480)
chr7 (26-117)||(20596174-20596265)
chr7 (33-115)||(19353897-19353979)
chr7 (31-115)||(11406227-11406311)
chr7 (52-117)||(11559818-11559884)
chr7 (33-90)||(14688094-14688151)
[»] chr4 (3 HSPs)
chr4 (26-113)||(2680510-2680597)
chr4 (54-115)||(16654590-16654651)
chr4 (26-117)||(11324583-11324675)
[»] chr8 (2 HSPs)
chr8 (26-113)||(12376190-12376277)
chr8 (31-116)||(12240923-12241008)
[»] scaffold0423 (1 HSPs)
scaffold0423 (31-117)||(14341-14427)
[»] chr5 (2 HSPs)
chr5 (33-115)||(17660759-17660841)
chr5 (70-115)||(24118360-24118405)
[»] chr3 (2 HSPs)
chr3 (54-115)||(14406000-14406061)
chr3 (54-117)||(3444347-3444410)
[»] chr2 (4 HSPs)
chr2 (38-114)||(12953147-12953223)
chr2 (54-118)||(25347945-25348009)
chr2 (68-110)||(27111849-27111891)
chr2 (78-114)||(20474590-20474626)
[»] chr6 (2 HSPs)
chr6 (52-116)||(9385392-9385457)
chr6 (52-115)||(15002477-15002541)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 16950647 - 16950795
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaattgtgtcttttgtt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16950647 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgaggccaatatacaaatatccaacaattgtgtcttttgtt 16950746  T
Q  131 gacctcctcgttttatttctccccaactcttcttctgcttcttcttcat 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16950747 gacctcctcgttttatttctccccaactcttcttctgcttcttcttcat 16950795  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 18379477 - 18379388
Alignment:
Q  26 aaccataccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    |||| |||| ||||||||||||||  | ||||||||||||| ||||||||| |||||||||||||||| |||| | ||||||| ||||||    
T  18379477 aaccgtacccacatgttgaaacatcgtatccaacatcttgcatgaatattttttttaacaataatgaggccaacacacaaatacccaaca 18379388  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 18389468 - 18389408
Alignment:
Q  57 aacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaat 117  Q
    |||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  18389468 aacatcttgcatgaatatttgttttagcaataatgaggccaatacacaaatatccaacaat 18389408  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 22239244 - 22239177
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaa 98  Q
    ||||||||||||||||||||| || |||||||||||||| | |||||||||| ||| |||||| ||||    
T  22239244 taccaacatgttgaaacatttggtacaacatcttgcttgtacatttgttttagcaaaaatgaggccaa 22239177  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 8902734 - 8902796
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgag 93  Q
    |||| |||||||||||||||  |||||||||||| |||| |||||||||||| ||||||||||    
T  8902734 tacccacatgttgaaacattgggtccaacatcttccttgtatatttgttttagcaataatgag 8902796  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 31268480 - 31268395
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaa 116  Q
    |||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||    
T  31268480 tacccacatgttgaaacattgggtccaacatcttgcttgtatatttgttttaacaataatgaggccaaaacacaaatatccaacaa 31268395  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 20596265 - 20596174
Alignment:
Q  26 aaccataccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaat 117  Q
    |||| ||||||||||||| |||| || ||||||||||||||||| | ||||| |||| ||| |||||| || | ||||||||||||||||||    
T  20596265 aaccgtaccaacatgttgcaacacttggtccaacatcttgcttgtaaatttgatttagcaaaaatgaggcctacatacaaatatccaacaat 20596174  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 19353897 - 19353979
Alignment:
Q  33 ccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    ||||||||||| |||||  | ||||| ||| ||| ||||||||||||||| || ||||||  |||||||||||||||||||||    
T  19353897 ccaacatgttggaacatcgtatccaatatcatgcatgaatatttgttttagcagtaatgaagccaatatacaaatatccaaca 19353979  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 11406311 - 11406227
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    |||| |||||||||||||||   || ||||||||||||  ||||||||||    ||||||||| |||| ||||||||||||||||    
T  11406311 tacccacatgttgaaacattggatctaacatcttgcttctatatttgtttaggaaataatgaggccaacatacaaatatccaaca 11406227  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 11559884 - 11559818
Alignment:
Q  52 tgtccaacatcttgcttgaatatttgtttta-acaataatgagaccaatatacaaatatccaacaat 117  Q
    ||||||||||||  |||||||||||||||||  ||| |||||| |||| || |||||||||||||||    
T  11559884 tgtccaacatctcacttgaatatttgttttaggcaaaaatgaggccaacattcaaatatccaacaat 11559818  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 14688094 - 14688151
Alignment:
Q  33 ccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataat 90  Q
    ||||||||||| |||||  | ||||||||| ||| ||||||||||||||| |||||||    
T  14688094 ccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagcaataat 14688151  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 2680510 - 2680597
Alignment:
Q  26 aaccataccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaa 113  Q
    |||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||| ||||||  ||||||||||||||||||    
T  2680510 aaccgtaccaacatgttgaaacatttgatccaacatcttacttgaatatttgttttagcaacaatgaggtcaatatacaaatatccaa 2680597  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 16654651 - 16654590
Alignment:
Q  54 tccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    ||||||||| | | ||||||||||||||| |||||||||  |||||| ||||||||||||||    
T  16654651 tccaacatcgtacatgaatatttgttttagcaataatgaagccaatacacaaatatccaaca 16654590  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 11324675 - 11324583
Alignment:
Q  26 aaccataccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaa-caataatgagaccaatatacaaatatccaacaat 117  Q
    |||||| |||| ||||||  |||| |||| ||||||||  | |||||||||||||||  ||| | |||  |||||||||||||||||||||||    
T  11324675 aaccatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaat 11324583  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 12376277 - 12376190
Alignment:
Q  26 aaccataccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaa 113  Q
    ||||||||| || ||||| ||||| || ||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||    
T  12376277 aaccatacccacctgttggaacatcttatccaacatcttgcatgaatatttgttttagcaataatgaggccaacatacaaatatccaa 12376190  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 12240923 - 12241008
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaa 116  Q
    |||| |||||||||||||||  |||||||||||| |||| ||||||| |||| ||| |||||  |||| |||||||||||||||||    
T  12240923 tacccacatgttgaaacattaggtccaacatcttacttgtatatttgatttagcaaaaatgatgccaacatacaaatatccaacaa 12241008  T

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Target: scaffold0423 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 14341 - 14427
Alignment:
Q  31 taccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaat 117  Q
    |||| |||||||| |||||  | ||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  14341 tacccacatgttggaacatcgtatccaacatcttgcatgaatatttgttttaaaaataatgaggccaacatacaaatatccaacaat 14427  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 17660841 - 17660759
Alignment:
Q  33 ccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    ||||||||||| |||||  | ||||||||| ||| ||||||||||||||| |||||||||  |||||||||||||||||||||    
T  17660841 ccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 17660759  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 24118360 - 24118405
Alignment:
Q  70 aatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| ||||    
T  24118360 aatatttgttttatcaataatgaaaccaatacacaaatatctaaca 24118405  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 14406061 - 14406000
Alignment:
Q  54 tccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaaca 115  Q
    ||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14406061 tccaacatcttgcatgaatatttgttttagcaataataaaaccaatatacaaatatccaaca 14406000  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 3444410 - 3444347
Alignment:
Q  54 tccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaat 117  Q
    ||||||||||||| ||||||||| ||||| |||||||||  | |||||||||||||||||||||    
T  3444410 tccaacatcttgcatgaatatttattttagcaataatgacgctaatatacaaatatccaacaat 3444347  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 12953147 - 12953223
Alignment:
Q  38 atgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaac 114  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||| ||| |||||| |||| ||||||||| |||||    
T  12953147 atgttgaaacatttggtccaacatcttgcttgtatatttgatttagcaacaatgaggccaacatacaaataaccaac 12953223  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 25347945 - 25348009
Alignment:
Q  54 tccaacatcttgcttgaatatttgttttaacaataatgagaccaatatacaaatatccaacaatt 118  Q
    ||||||||||||| ||||||||||||||| ||| | |||| |||||||| ||||||| |||||||    
T  25347945 tccaacatcttgcatgaatatttgttttagcaaaagtgaggccaatatataaatatctaacaatt 25348009  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 27111849 - 27111891
Alignment:
Q  68 tgaatatttgttttaacaataatgagaccaatatacaaatatc 110  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  27111849 tgaatatttgttttagcaataatgaaaccaatatacaaatatc 27111891  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 20474626 - 20474590
Alignment:
Q  78 ttttaacaataatgagaccaatatacaaatatccaac 114  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  20474626 ttttagcaaaaatgagaccaatatacaaatatccaac 20474590  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 9385392 - 9385457
Alignment:
Q  52 tgtccaacatcttgcttgaatatttgttttaa-caataatgagaccaatatacaaatatccaacaa 116  Q
    ||||||||||||  |||||||||||||||||| ||| | |||  ||||||||||||||||||||||    
T  9385392 tgtccaacatctcacttgaatatttgttttaagcaaaagtgaatccaatatacaaatatccaacaa 9385457  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 15002541 - 15002477
Alignment:
Q  52 tgtccaacatcttgcttgaatatttgtttta-acaataatgagaccaatatacaaatatccaaca 115  Q
    ||||||||||||  |||||||||||||||||  ||| || || ||||| ||||||||||||||||    
T  15002541 tgtccaacatctcacttgaatatttgttttaggcaaaaaagaaaccaacatacaaatatccaaca 15002477  T

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