View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_13 (Length: 428)
Name: NF10129_low_13
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 35794914 - 35795315
Alignment:
| Q |
16 |
acctttgttccatgagaagttattaaatttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccaca |
115 |
Q |
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| T |
35794914 |
acctttgttccatgagaagttattaaatttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccaca |
35795013 |
T |
|
| Q |
116 |
gaggagcacccaggacctgcaacaacaaatcatcttgtcacctttgcagagaacatatatcatgtgtaccaacagctaatgaaatcagcagtgttgtaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35795014 |
gaggagcacccaggacctgcaacaacaaatcatcttgtcacctttgcagagaacatatatcatgtgtaccaacagctaatgaaatcagcagtgttgtaaa |
35795113 |
T |
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| Q |
216 |
ctctctcaaattagctgtcaccttaaacaaaagtgattatgataagttataaagtaatgcacttccatttttatctctcttcnnnnnnnncttaagacca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35795114 |
ctctctcaaattagctgtcaccttaaacaaaagtgattatgataagttataaagtaatgcacttccatttttatctctcttcttttttttcttaagacca |
35795213 |
T |
|
| Q |
316 |
tatttccacgttcatgtgtgtttctgttgtttagttattatactaaatagcatcttacaatttgtttgataaaaattccatgcactctactttggttttc |
415 |
Q |
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| T |
35795214 |
tatttccacgttcatgtgtgtttctgttgtttagttattatactaaatagcatcttacaatttgtttgataaaaattccatgcactctactttggttttc |
35795313 |
T |
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| Q |
416 |
at |
417 |
Q |
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|| |
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| T |
35795314 |
at |
35795315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 3340261 - 3340150
Alignment:
| Q |
23 |
ttccatgagaagttattaaatttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccacagaggagc |
122 |
Q |
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|||||||||||||||||||||||||| |||| |||||| | | ||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
3340261 |
ttccatgagaagttattaaatttaagtcctttgccatcagtgt------ccactaaaaatgggccaatctcttgtgttgctccatatccaacagatgagc |
3340168 |
T |
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| Q |
123 |
acccaggacctgcaacaa |
140 |
Q |
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| T |
3340167 |
atccaggacctgtaacaa |
3340150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 3332641 - 3332578
Alignment:
| Q |
71 |
tccactaaaaatggaccaatctcttgtgttgctccatatcccacagaggagcacccaggacctg |
134 |
Q |
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| T |
3332641 |
tccactaaaaatggaccaatctcttgtgttgctccatatccaacagatgagcatccaggacctg |
3332578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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